TTTCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAAGCCTCTCTTTTTTTCTTCCTTCCATGCCAGGCTGAAGC
CATTCAAGTGAACCCTCTTCAGATTTTGCTGCCTTCCACTCTCTGTACCT
CATTTGCATTTCTTCTGCCAGTTGCAAATCCACCCAATGCTATTGTTTTT
TCCTATGGCCACCTGAAAGTCATTGACATGGTAAGTCAGCAGCTAAGAGA
ACACTGTAACCCAATACACCCCTCCACCTGGTGGACTGAGTGCCTGCTAG
CCTTGAGCTCTAACCAACCATTGAGCAAAGCAGAGTTTGAAGCCTATTTC
TGAAAGTGTGTGCATGACTGGCCATAGAAATATTTTTTAAAAAGTGGACA
TGCCAGAAGTGGAATGCCCTTAGCGTTAGCACTCGCAAATAGAGATGCGG
AATGCATACGCACTGGTCTGCGAAAGGAAAAGAGCACAGAATTTCTTAAC
ACAACTTCTTAACCATAAGTCAAGTGAGGCAAGTAGAAGAAGCAGAATTG
ATAGAATCCAACAATTAAAACAGCACTATGGTTTTCTATCACGAGTATTT
ATAAAATATTTGCAATATTAACACACTCCCCGGTGCCTGGGGCAAGAGTG
TCTTCCTTTTTTATTTTAACACCTGCTTTTGTAGGGTGTCTGTGAAAAAT
AAAGGCAAATTTATGTGATAGAACAAACATCTTATTTCTAAATACAAAAA
TA

NNCCGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGACATGGCTAAAGCCTTC
TGCCAGTGTTCCAACAGTTCTAGAAATGTCCTTGAGCAAGATCATGGGCT
TGGAATTCAGTAAGATTGTAAAAGCTAAGTCACTCCCTTACACAGGAATT
TACCATCACTAAGGAAGAAGGAAGTTTCAGACCAAAGGAGAAACCAGAAT
AGATACTTAGAACTGTAGCAGAGTTACACCCATACACACGTATTTACAAT
GGCCTAAGGGGAAGGTGGACTATATAAGAGACTAAAATAGGAACTATGGC
AAGGGCGCGAAGCCCTTGACCCTGGCTTCTAAGATTAGTGAATCTTAGGT
GGAGCCCTAGTTGATCCCAGTTGTTATCAATGAATTCTATCCCAGGTGGT
TCCTGTTAGACCTTTTGTGTTTGCATTCCTCTGTTTTATGTAAGATTCTG
GTTACCTCAATTGTACCTTGCGAATATGTCACCCAACTTCCTTATTGTCC
TCTGCATAAAAAGTCTGATGCTCGATTTGAAAATTACATTCAGATTCCAC
ATGAACTCTCCTGTGTGCGTCTATTTGTCACTCATCCTACGCTTTGTCCA
CCCGTGACTAGAGACCCGTTCCACGCAGACNAAGGGGCCCAGAGGGTCTG
CGGCAGTTAGGGTTTCATTGTTGTGAAGAGATACCATGTCCATGGAAACT
CTTATAAAG

Query= MSMg01no516_n02.b1 MSMg01no516_n02.b1 CHROMAT_FILE:
MSMg01no516_n02.b1 PHD_FILE: MSMg01no516_n02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:41 2005
         (661 letters)



>mm_chr6_24040087_24041147
          Length = 1061

 Score = 1247 bits (645), Expect = 0.0
 Identities = 654/657 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaagcctctctttttttcttccttccatgccaggctgaagccattcaagtgaacc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 gaattcaagcctctctttttttcttccttccatgccaggctgaagccattcaagtgaacc 802

                                                                       
Query: 65  ctcttcagattttgctgccttccactctctgtacctcatttgcatttcttctgccagttg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ctcttcagattttgctgccttccactctctgtacctcatttgcatttcttctgccagttg 742

                                                                       
Query: 125 caaatccacccaatgctattgttttttcctatggccacctgaaagtcattgacatggtaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caaatccacccaatgctattgttttttcctatggccacctgaaagtcattgacatggtaa 682

                                                                       
Query: 185 gtcagcagctaagagaacactgtaacccaatacacccctccacctggtggactgagtgcc 244
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 681 gtcagcagctaagagaacactgtaacccaatatacccctccacctggtggactgagtgcc 622

                                                                       
Query: 245 tgctagccttgagctctaaccaaccattgagcaaagcagagtttgaagcctatttctgaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgctagccttgagctctaaccaaccattgagcaaagcagagtttgaagcctatttctgaa 562

                                                                       
Query: 305 agtgtgtgcatgactggccatagaaatattttttaaaaagtggacatgccagaagtggaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtgtgtgcatgactggccatagaaatattttttaaaaagtggacatgccagaagtggaa 502

                                                                       
Query: 365 tgcccttagcgttagcactcgcaaatagagatgcggaatgcatacgcactggtctgcgaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgcccttagcgttagcactcgcaaatagagatgcggaatgcatacgcactggtctgcgaa 442

                                                                       
Query: 425 aggaaaagagcacagaatttcttaacacaacttcttaaccataagtcaagtgaggcaagt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggaaaagagcacagaatttcttaacacaacttcttaaccataagtcaagtgaggcaagt 382

                                                                       
Query: 485 agaagaagcagaattgatagaatccaacaattaaaacagcactatggttttctatcacga 544
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaagaagcagaattgatagaatccaacaattaaaacagcactatggttttctatcacga 322

                                                                       
Query: 545 gtatttataaaatatttgcaatattaacacactccccggtgcctggggcaagagtgtctt 604
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtatttataaaatatttgcaacattaacacactccccggtgcctggggcaagagtgtctt 262

                                                                    
Query: 605 ccttttttattttaacacctgcttttgtagggtgtctgtgaaaaataaaggcaaatt 661
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccttttttattttaacacctgcttttgtagggtgtctgtgaaaaataaaggcaaatt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space:   684201
Effective search space used:   684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)