XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTATA
TGGCAACAGCTGCTCTATAACTAAAGCTTGCACTGGACAGTGATGCTGTG
CTTCTCTGCACATTCCCTACACAAATTATTTGCATTTACATTTGGGGCTA
CCAAGGCCTTTATAGTATCCCATGTATTTACCACATTATTACAAGATAAT
ATCTTGAACACAAAGCCAGGCTTCTCTTACTGGATCCCTCTGGGATCTGC
TTAACTTCCAATTTCTTCTCTTGCCATATCTCCCACTCTAACTCCATGTT
TCTTCCAAGTGGAATTACTTCCTGATTCTGTTTCTTCCTATTTCCTAACT
CTATGGACCGAACCAGAGCCTCCTCCTCATCCATGCTCTCTAAGACAGTA
AGGACCAGCTTGTCATTTATCCAAAGGGTTAATTTCCAAAATGAGATAAC
ATAAATGCCGGAGTTTTTCTTTCAATATGATAAAAACTTAACTTATTATC
ACTTGAGGGCGTAGTTATAACTTGATTACACTATGCTAAAAAGAGAGAAA
ACTAGCATAAATATCTGACACATAAGGATTAATCTGGGATATTTGCAAAG
ACAAAACATGGGGAGTATTCCAACATTTCCTCCTGTATTAAAACACATTT
TAAAATTCAACGAGCACACATAAAGGCATAATGGTTTTTAATTCTTGCAA
TGTACCAGCCAAGATGGGAGCTATTGTTAGTGCTCTCATTTACNATTAAG

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTGTTTAGCTCTGTACCTCACTTTTAATTGGGTTA
CTGGACATCAATCTAGCCACAAAAACATCAACCCAAAATTTGTCCTGCCT
ATAAGATGCACAGGAATAAAAATTCAGCAGACTAGGGGAATAGTCAAACA
ATGAGTGGCCCAACTGGAGACCATTCCATGGGAAAAAGCCATTCCTTGAC
ACTATTAAAGATATTCTGCTATGCTTGCAGACAGGAACATAGCATAACTG
TTTCCTGAGAGGCTTCATCCAGCAGCAGATGGAAACAGATACAGAGACCC
ACAGTGAAACATCAGGCAGAGCTTGTGGTATAGAATTGAATAAGCCCAAG
GGGTTAAAGACATCATAGGAAAACCTACAAAGACAATTAACCTGGGCTCA
CAGAGACTGACCCATCAACCAAAGAGTATGTGGGAGCTGAATCTAGGCCG
CCTTCACATTTGTAGCAGATAGATGTACAGCTTGGTCTTCATGTGGGTCC
CCTCACAACTGGAGTGGTGCTATTTCTGACTCTTTTGTCTAACATTGGAT
CCCTTTCCTACCTGGACTACCTGGTTGGGCCTCAGGGGGAGAGGATGTGC
TTAGTCCTCCTGGGACTAGATATCCCGGGGTAGGGTGGTAGGCAAATGGG
GTGGCTTCCTCTTCTCTGAAGAAAATGAAAAGAAATTAGGAGAAATTTTC
N

Query= MSMg01no517_m13.b1 MSMg01no517_m13.b1 CHROMAT_FILE:
MSMg01no517_m13.b1 PHD_FILE: MSMg01no517_m13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:59 2005
         (671 letters)



>mm_chr6_63220316_63221387
          Length = 1072

 Score = 1261 bits (652), Expect = 0.0
 Identities = 664/668 (99%), Gaps = 1/668 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcc-tatatggcaacagctgctctataactaaagcttgcactggacagtgatgctg 63
           ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 gaattccataaatggcaacagctgctctataactaaagcttgcactggacagtgatgctg 813

                                                                       
Query: 64  tgcttctctgcacattccctacacaaattatttgcatttacatttggggctaccaaggcc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 tgcttctctgcacattccctacacaaattatttgcatttacatttggggctaccaaggcc 753

                                                                       
Query: 124 tttatagtatcccatgtatttaccacattattacaagataatatcttgaacacaaagcca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 tttatagtatcccatgtatttaccacattattacaagataatatcttgaacacaaagcca 693

                                                                       
Query: 184 ggcttctcttactggatccctctgggatctgcttaacttccaatttcttctcttgccata 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 ggcttctcttactggatccctctgggatctgcttaacttccaatttcttctcttgccata 633

                                                                       
Query: 244 tctcccactctaactccatgtttcttccaagtggaattacttcctgattctgtttcttcc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 tctcccactctaactccatgtttcttccaagtggaattacttcctgattctgtttcttcc 573

                                                                       
Query: 304 tatttcctaactctatggaccgaaccagagcctcctcctcatccatgctctctaagacag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 tatttcctaactctatggaccgaaccagagcctcctcctcatccatgctctctaagacag 513

                                                                       
Query: 364 taaggaccagcttgtcatttatccaaagggttaatttccaaaatgagataacataaatgc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 taaggaccagcttgtcatttatccaaagggttaatttccaaaatgagataacataaatgc 453

                                                                       
Query: 424 cggagtttttctttcaatatgataaaaacttaacttattatcacttgagggcgtagttat 483
           | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 452 cagagtttttctttcaatatgataaaaacttaacttattatcacttgagggcatagttat 393

                                                                       
Query: 484 aacttgattacactatgctaaaaagagagaaaactagcataaatatctgacacataagga 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 aacttgattacactatgctaaaaagagagaaaactagcataaatatctgacacataagga 333

                                                                       
Query: 544 ttaatctgggatatttgcaaagacaaaacatggggagtattccaacatttcctcctgtat 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ttaatctgggatatttgcaaagacaaaacatggggagtattccaacatttcctcctgtat 273

                                                                       
Query: 604 taaaacacattttaaaattcaacgagcacacataaaggcataatggtttttaattcttgc 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 taaaacacattttaaaattcaacgagcacacataaaggcataatggtttttaattcttgc 213

                   
Query: 664 aatgtacc 671
           ||||||||
Sbjct: 212 aatgtacc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1072
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1062
Effective search space:   701982
Effective search space used:   701982
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)