BAC Information

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BAC

Clone NameMSMg01-518H15
Chromosome6 (Build37)
Map Location 133,080,156 - 133,080,807
singlet/doubletsinglet
Overlap genenone
Upstream genePrb1, LOC631126, LOC100043878, Prpmp5, EG667929, EG381818, Prh1, Prp2, A630073D07Rik, Tas2r120, Tas2r121, Tas2r122, Tas2r115, Tas2r124, Tas2r102, Tas2r136, Tas2r145-ps3, Tas2r117, Tas2r111-ps2, Tas2r123, Tas2r116, Tas2r110, Tas2r113, Tas2r142-ps5, Tas2r125, Tas2r146-ps1, Tas2r129, Tas2r131, Tas2r109, EG667992, LOC100043634, Tas2r140, LOC668002, Tas2r141-ps4, 2700089E24Rik, LOC630618
Downstream gene5530400C23Rik, EG545884, EG626372, LOC100043649, LOC100043653, EG545886, LOC622962, Kap, LOC100043655, LOC100043656, LOC668063, Etv6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-518H15.T7 (MSMg01no518_h15.b1)MSMg01-518H15.TJ (MSMg01no518_h15.g1)
ACCAG589976AG589977
length769779
length of high quality
(start - end)		659 (44 - 702)622 (77 - 698)
definitionCHROMAT_FILE: MSMg01no518_h15.b1 PHD_FILE: MSMg01no518_h15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:53 2005CHROMAT_FILE: MSMg01no518_h15.g1 PHD_FILE: MSMg01no518_h15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCATTGTATTCTGAATTATAAATATTTAGCTTCAGAATATGATGTTAT
TTTTATTGTTGTTTATGTGTATTGTCCTTTCTTTTCAAGCAAGTATATAA
TTCCTTTTGTGGCTGTATCATATATTTAGCCCCAATATTGTCAATAGGCA
TGTAGATGGATTTCAGATTTTCCTAGTATAAGCAGGTTACAGGAAATATC
TTTGTGGAATAAATTTATACATACATAACAATTTAGACATTATTTATTTG
AGACCAAATAGGAGGTAACCAATATTCCTATAAGTGATGGAAGAAATAAA
GTTTGGGTTGGCGTGAAGCCAGTTCTCCTCAATGGTCCTTGTAGGCAATG
GAAAATTATATTGCATATCTAATAGCCTTCCTTTTTCCTAGTTATCAGAA
ACATGGCAATTCGGTCATAACCACAAGGTCAATGTCCCAAAGAAATTTTT
AGCATGGAATTTTTGATTGTTGTCTACTTTTCTGGGAGTGTGTAATACTC
AGATTAAAATTTAAGAGCCACTGACCCAACATAAGATCATTCAGGACTTC
TAGTAATAGACAATTCCATAAAATCCATTGTACCCTTAAACTAATAACAT
ATGAAAACCTTCCCTTATAAACATTCCCACCTTTTTTTCTTACTGGAACA
ATTAGAAAGAATTCCTCTGTCTCTGTCTATGTCTATGTCTCTCTGTCTCT
CTTTCATGGATGTGTGGGN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTAGCTCTGTTCCCCCATT
TATGAATAGAGCTATTTTGTTCTCTGGAGTCTACCTTCTTGAGTTCTTTG
TTTATATTGGATATTAGCCCTCTATCAGATGTAGTATTGGTAAAGATCTT
TCACAATTTACTGGTTACCTTTTTGTCCTATTTACAGTGGCATTTGCCTT
ACAGAAGCTTTGCAATTTTTTGAGGTTCCATTTTTTTTTATTCTTGACCT
TAGAGCATGAGCTATTGGTGTTCTTTTCAAGAAAATTCCCCTGTGTACAT
GTGTTCGAGACTTTCCCCCACATTCCCTTCTATTAAATTCAGGGTATCTG
GACTTACTTGAAGATCTGCTTGGACTTCAGCTTTCTACAGCGAGAAAAGA
ATGGATCAATTTGCATTCTTTTGCAGGTTGACTGCCAATTAAACCAGCAC
CACTTTTTTAATATGCTGTTTTAATTTTTAATTAATTTAATTTATTAATT
AAATTTAATTTACTAATTTGATTTTTATTAATTTTTAATATGCTTTTTTC
CTTTGGATGGCTTTACCTCTTTTGTCAAAGATCAAGTGACAGTAGGTTTG
TGGGATCATTTCTGAGTCTTCATTCTATAAAATTGACCTACCTGTCTGTC
ATTGTNACAATACCATGCAGTTTGTTTTGTTTTATATATCACAATTGCTC
TGTAGAACTTCAGCATGTATTAATTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no518_h15.b1 MSMg01no518_h15.b1 CHROMAT_FILE:
MSMg01no518_h15.b1 PHD_FILE: MSMg01no518_h15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:53 2005
         (659 letters)



>mm_chr6_133079952_133081007
          Length = 1056

 Score =  928 bits (480), Expect = 0.0
 Identities = 613/660 (92%), Gaps = 13/660 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattc-cattgtattctgaattataaatatttagcttcagaatatgatgttatttttat 63
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 856 gaattcacattgtattctgaattataaatatttagcttcagaatatgatgtta--tttat 799

                                                                       
Query: 64  tgttgtttatgtgtattgtcctttcttttcaagcaagtatataattccttttgtggctgt 123
           ||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||
Sbjct: 798 tgttgtttatgtgtattatcctttcttttcaagtaaatatataattccttttgtggctgt 739

                                                                       
Query: 124 atcatatatttagccccaatattgtcaataggcatgtagatggatttcagattttcctag 183
           ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 738 atcatatatttagccccaatattgtcaatagacatgtagatggatttcagatttccctag 679

                                                                       
Query: 184 tataagcaggttacaggaaatatctttgtggaataaatttatacatacataacaatttag 243
           ||||||||||||| | ||||||||||| ||||||||||||||| |||  |||||||||||
Sbjct: 678 tataagcaggttataagaaatatctttttggaataaatttatatatatgtaacaatttag 619

                                                                       
Query: 244 acattatttatttgagaccaaataggaggtaacc-aatattcctataagtgatggaagaa 302
           |||||||||||||||||||||||||||||||||| |||| |||| |||||||||| ||| 
Sbjct: 618 acattatttatttgagaccaaataggaggtaaccaaatactcctgtaagtgatgggagac 559

                                                                       
Query: 303 ataaagtttgggttggcgtg--aagccagttctcctcaatggtccttgtaggcaatggaa 360
            ||||||  ||||||| |||  ||  ||||||||||||||||||||||||||||||||||
Sbjct: 558 gtaaagtaggggttggggtgcaaa--cagttctcctcaatggtccttgtaggcaatggaa 501

                                                                       
Query: 361 aattatattgcatatctaatagccttcctttttcctagttatcagaaacatggcaattcg 420
           ||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||| |
Sbjct: 500 aattatattccatatctaatagccttccttttttctagttatcagaaacatggaaatttg 441

                                                                       
Query: 421 gtcataaccacaaggtcaatgtcccaaag-aaatttttagcatggaatttttgattgttg 479
           ||||||||| ||||||||||||||| ||| ||||| |||||||| ||| |||||||||||
Sbjct: 440 gtcataaccgcaaggtcaatgtccc-aagcaaattattagcatgcaatctttgattgttg 382

                                                                       
Query: 480 tctacttttctgggagtgtgtaatactcagattaaaatttaagagccactgacccaacat 539
           |||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||
Sbjct: 381 tctacttttctgggagtgtgtaatactcagattaaaatttaagatctactgacccaaaat 322

                                                                       
Query: 540 aagatcattcaggacttctagtaatagacaattccataaaatccattgtacccttaaact 599
           ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 321 aagatcattcaggacttctagtaatagacaattccataatatccagtgtacccttaaact 262

                                                                       
Query: 600 aataacatatgaaaaccttcccttataaacattcccacctttttttcttactggaacaat 659
           ||||||||  ||||||||||||||||||| |||||||| ||||||||| |||||||||||
Sbjct: 261 aataacat--gaaaaccttcccttataaaaattcccac-tttttttctcactggaacaat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1056
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1046
Effective search space:   678854
Effective search space used:   678854
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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