BAC Information

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BAC

Clone NameMSMg01-518K13
Chromosome6 (Build37)
Map Location 148,407,212 - 148,407,752
singlet/doubletsinglet
Overlap genenone
Upstream geneEG622129, Ccdc91, LOC100039712, LOC100039727, LOC100039736, Mlstd1, Ergic2, Tmtc1, 1110033J19Rik
Downstream geneEG622319, LOC100042984, LOC665372, Ipo8, Caprin2, EG665395, Tera, LOC667138, D030011O10Rik, 4833442J19Rik, C730024G19Rik, 2810474O19Rik, LOC665426, LOC622481, LOC665441, Bicd1, LOC667182
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-518K13.T7 (MSMg01no518_k13.b1)MSMg01-518K13.TJ (MSMg01no518_k13.g1)
ACCAG590115AG590116
length730717
length of high quality
(start - end)
426 (53 - 478)603 (84 - 686)
definitionCHROMAT_FILE: MSMg01no518_k13.b1 PHD_FILE: MSMg01no518_k13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:07 2005CHROMAT_FILE: MSMg01no518_k13.g1 PHD_FILE: MSMg01no518_k13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTTTCTTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCTCCTTACGCAAATGAGGCATTCCCAGTACTCTGGCCT
GGGCCGATGATGTGCCTACTCACCCTCCAAAGGTTTAAATAGCCTGTGTT
CCCCCCAATAAAATGAGCTGCTCAATGAAGCTGCCTCCCCAGAAGTCGGT
CTCTCATCCAGCTCACTTGCCTTCTCCATCGTCCCTGGCTGGTCTGCATT
GCTTTCCCTCTCAGGTCCCTGATCTGATTGAGGGCATCATGCAATTAATA
GAGGGGGAGCAGAGCAGGAATGACAAAGTTCACTCCTGATGACTGCGGGG
GAATGAAAAGTGCTGTCTGGTGCTTCAGTCGGTGCTGGTGTTAGAAGAGC
GTAGAGAATACTACGAGAGGCAGAGATGAAGATGCAGATGGCATCATGAG
ATGATGAGCTGGGCTTTGGAAACTGGAGAAGATGTACAGAGGTGTAGGCA
CGAAGTAGACCAAGATGTGGGAGAGCTAGAAGCAGGTAATGCTAGAAGTC
ACCTACAAATAGGTCACCGCGAGGGTGAGTGGAGGATGTCAGGCCAAGAG
GCCTAAGCATAACACAGCTGATGTGCTCACTTGGTGCATGGTGGGCAAGG
GCCTAGGAAAGTGTATTTAGCCACTAATCTGGCATTTTGTGCTGAAGTTA
AAAAGTGAACGTTCTTGACTTGTATCCTAT
CGATGGGAGCGATGCAGGGGGGAGGCGTGAGGGGCGCCTGTTCAACAAXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGATCTTTAATGAGAAT
ACATATCAGATGGAGATCTCTGACAAGGAAGGCATTAATACCGTCCGAGA
CAGCCTGTGAGAGCTTACAACAGTTTGATACAAGTGGTGAAGTAAAGCTA
TGGGCCAAGCCCTCTAAGCAGAATCCAGCCATTGCTGACAACAGAACTCA
TAGAGATTGGCCTTTAGCCAATGAAGATTTTGGAAATATATCAGAGAGAA
AAGGGAAAAAAAAAAGAACTATAACATTTCTAGATAAACACCAAAGGAGA
ATATATCTGTTAGGACAAGGTCTTAAAATTTTCAGTTACCAAGGCCTAGG
TTCTAGAATTGACTGTTGTTCACACCAATTCAGCCTAACCAGCCTAACCA
GCCTAACCAGCCTAACCAGCCTAACCAGCCTAACCAGGTGTGTCTATCCT
ATGGCCTACAGGCTGCATACATCCCAGGATACTGATGATACCTTCATAGA
TGGCAGGGTCATGTTGCAATGTCAAAAGGTTGTCTACTCCAACCAAAGGG
GTTTGTTAAAGAACACTTTGGCTCGCCAGTGATATAGTGTAACTATAATC
TAGTTGTCAGACTAGAAGAAGTGCTGAGCCTACGTCATTCTGTGCTAGAA
AGCATTGTACATGGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no518_k13.g1 MSMg01no518_k13.g1 CHROMAT_FILE:
MSMg01no518_k13.g1 PHD_FILE: MSMg01no518_k13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:07 2005
         (603 letters)



>mm_chr6_148407212_148408214
          Length = 1003

 Score =  872 bits (451), Expect = 0.0
 Identities = 501/541 (92%), Gaps = 36/541 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatctttaatgagaatacatatcagatggagatctctgacaaggaaggcattaataccg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 agatctttaatgagaatacatatcagatggagatctctgacaaggaaggcattaataccg 482

                                                                       
Query: 61  tccgagacagcctgtgagagcttacaacagtttgatacaagtggtgaagtaaagctatgg 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 481 tccgagacagcctgtgagagcttataacagtttgatacaagtggtgaagtaaagctatgg 422

                                                                       
Query: 121 gccaagccctctaagcagaatccagccattgctgacaacagaactcatagagattggcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gccaagccctctaagcagaatccagccattgctgacaacagaactcatagagattggcct 362

                                                                       
Query: 181 ttagccaatgaagattttggaaatatatcagagagaaaagggaaaaaaaaaagaactata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 361 ttagccaatgaagattttggaaatatatcagagagaaaagggaaaaaaataagaactata 302

                                                                       
Query: 241 acatttctagataaacaccaaaggagaatatatctgttaggacaaggtcttaaaattttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 acatttctagataaacaccaaaggagaatatatctgttaggacaaggtcttaaaattttc 242

                                                                       
Query: 301 agttaccaaggcctaggttctagaattgactgttgttcacaccaatt------------- 347
           || ||||||||||||||||||||||||||||||||||||||||||||             
Sbjct: 241 agctaccaaggcctaggttctagaattgactgttgttcacaccaattcagcctaaccagc 182

                                                                       
Query: 348 -----------------------cagcctaaccagcctaaccagcctaaccagcctaacc 384
                                  |||||||||||||||||||||||||||||||||||||
Sbjct: 181 ctaaccagcctaaccagcctaaccagcctaaccagcctaaccagcctaaccagcctaacc 122

                                                                       
Query: 385 agcctaaccagcctaaccaggtgtgtctatcctatggcctacaggctgcatacatcccag 444
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agcctaaccagcctaaccaggtgtgtctatcctatggcctacaggctgcatacatcccag 62

                                                                       
Query: 445 gatactgatgataccttcatagatggcagggtcatgttgcaatgtcaaaaggttgtctac 504
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 61  gatactgatgataccttcatagatggcagggtcatgttgcaatgtcaaaaggctgtctac 2

            
Query: 505 t 505
           |
Sbjct: 1   t 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space:   588849
Effective search space used:   588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)