BAC Information

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BAC

Clone NameMSMg01-518L20
Chromosome6 (Build37)
Map Location 42,329,026 - 42,329,719
singlet/doubletsinglet
Overlap genenone
Upstream geneEG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik, Kel, Olfr459, Pip, Sval2, Sval1, Sval3, Sva, Tas2r139, Tas2r144, Gstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1
Downstream geneTas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2, BC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452, Olfr451-ps1, Olfr450, Olfr449, Olfr448, Olfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483, Olfr444, EG622841, Igk-V, Olfr443-ps1, GA_x5J8B7W6337-1183223-1183810, Olfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591, Olfr438, Olfr437, Olfr13, GA_x5J8B7W6337-1270568-1271367, Olfr435, Olfr434, LOC665745, Olfr47, Arhgef5, Nobox, Tpk1, LOC665747
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-518L20.T7 (MSMg01no518_l20.b1)MSMg01-518L20.TJ (MSMg01no518_l20.g1)
ACCAG590177AG590178
length774778
length of high quality
(start - end)		699 (46 - 744)627 (75 - 701)
definitionCHROMAT_FILE: MSMg01no518_l20.b1 PHD_FILE: MSMg01no518_l20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:14 2005CHROMAT_FILE: MSMg01no518_l20.g1 PHD_FILE: MSMg01no518_l20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCTAGAGATTCCAGCCTAGACGGGCAACACATTCTAGAAGTAAAC
TCTGCTAGCCTGGAAGACATAGTTGGCAGTTTATTTTAGCCCTCTCCCCT
CCCATGCTTGCTAAACTAAAAATCAACTTTAAGCAAGAATCAGTTTGCCA
TTCTCCTTTCCTCTCCCAAGATCTAACTAGTAAACTTTTGACAATGACCA
AGATCTCACTGTGTTCCTAGGGGGTTGTGTTCAGCACTTGCCTCAGCCTG
CCCTTATTAAATTTTTAACATGCCTGGGTTCACTAAGACATCTGCTCTCT
TCCTTTTCCTCCCACCCACTACCTGCTTGGGTGTTACTAAAAACCACACG
TTAATTCTTCAGGTTGGCATTACTGTCTTCTCAGGCTGTCATGCAAACAA
GACAGGGTAGGAAAGCAGGGTTTCTCACAAAATGTACACGCGTATTACTA
CAAGGAGTCTGAATCATAGCTTCTTCATAGTCCTGACTTGCCCCCTCTCA
CACTCCGATGAGGCAGAAATGAATCGAAATATTAAAGTAGCTGCGCAGCG
ATGTTTTTTAACTCTGTTGTGAGATCTGATAAGAATGGGGATAAGAAGGT
ATTTAGCTAAAGGCTCCTCTCTAAATACACACTTGGGTGTGAGGCAGAAC
TCCAAGTTAATTCCCACAGAGCGCCTGCCCCCTCCCCTTCCAGCAGCCCC
AGAATCTGCTCACCTCCCTTTTGT

CCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATTGCTCACATAGATAGATGGTGAC
AAAACAAAACCCAAAATTATGACTCTGAGAAAGGGACAGTGCCACAGACC
ATCCCAATCGGGTATGGGATCCCTGGAATGAGGGTCCTAGAAGCTAGGTG
GGTAAGGATTCAGTGGTGAGAAACAAATAAACACAGAAGCAGTTTGAAAC
TGAGTGTATTTTGCAGCTCTCAAGCAGGGAATTTTATACATTAAAACATC
AAACATTACATCTCTTAGAAACTATATCCAGTGAAATAGTCACAAATACC
AACAAAAATCATTTGGCACAGTAAAGCACAAAAATCATACAAGCATTACA
ACTCTGAAACTATGTATTCAGTGAGTCACAAACACAACAGGTAACATCAT
TATAAATCATCAAAATATAACAATTCTAAAAAGATGTATTCAGTGGGGGC
TGTCGTCCAAGGCTAGTGGCATATTATAGGAGCAGGTTAATGAATCTTTA
ACAGTCAGTGCTCTTAACTACTGAACTAACTTTCCAGCCCCATGATCAAT
TATTATTTAACATCTAGTGCCTGATTTTTTATAAATCTTCAATGTATAAA
TTTAAACTATTTCAATTCTTTCTAATTAAGGCTTTCTTTACCATATACCA
AAATCAACCTCGGATGACACATGTGTAGCCATATGAAATTTTATTGTTGG
GAAAAGTTTTATCTGTCATAATAGATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no518_l20.b1 MSMg01no518_l20.b1 CHROMAT_FILE:
MSMg01no518_l20.b1 PHD_FILE: MSMg01no518_l20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:14 2005
         (699 letters)



>mm_chr6_42328822_42329919
          Length = 1098

 Score = 1266 bits (655), Expect = 0.0
 Identities = 685/695 (98%), Gaps = 1/695 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccctagagattccagcctagacgggcaacacattctagaagtaaactctgctagc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 gaattccctagagattccagcctagacgggcaacacattctagaagtaaactctgctagc 839

                                                                       
Query: 65  ctggaagacatagttggcagtttattttagccctctcccctcccatgcttgctaaactaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 ctggaagacatagttggcagtttattttagccctctcccctcccatgcttgctaaactaa 779

                                                                       
Query: 125 aaatcaactttaagcaagaatcagtttgccattctcctttcctctcccaagatctaacta 184
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 aaatcaactttaaacaagaatcagtttgccattctcctttcctctcccaagatctaacta 719

                                                                       
Query: 185 gtaaacttttgacaatgaccaagatctcactgtgttcctagggggttgtgttcagcactt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 gtaaacttttgacaatgaccaagatctcactgtgttcctagggggttgtgttcagcactt 659

                                                                       
Query: 245 gcctcagcctgcccttattaaatttttaacatgcctgggttcactaagacatctgctctc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 gcctcagcctgcccttattaaatttttaacatgcctgggttcactaagacatctgctctc 599

                                                                       
Query: 305 ttccttttcctcccacccactacctgcttgggtgttactaaaaaccacacgttaattctt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttccttttcctcccacccactacctgcttgggtgttactaaaaaccacacgttaattctt 539

                                                                       
Query: 365 caggttggcattactgtcttctcaggctgtcatgcaaacaagacagggtaggaaagcagg 424
           |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 538 caggttggcattgctgtcttctcaggctgccatgcaaacaagacagggtaggaaagcagg 479

                                                                       
Query: 425 gtttctcacaaaatgtacacgcgtattactacaaggagtctgaatcatagcttcttcata 484
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 478 gtttctcacaaaatgtacacgcgtattactacaaggagtctgaatcatagcttcttcaca 419

                                                                       
Query: 485 gtcctgacttgccccctctcacactccgatgaggcagaaatgaatcgaaatattaaagta 544
           || |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 gtactgacttgccac-tctcacactccgatgaggcagaaatgaatcgaaatattaaagta 360

                                                                       
Query: 545 gctgcgcagcgatgttttttaactctgttgtgagatctgataagaatggggataagaagg 604
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 359 gctgcgcagcgatgttttttaactttgttgtgagatctgataagaatggggataagaagg 300

                                                                       
Query: 605 tatttagctaaaggctcctctctaaatacacacttgggtgtgaggcagaactccaagtta 664
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 299 tatttagctaaaggctcctctctaaatacacacttggatgtgaggcagaactccaagcta 240

                                              
Query: 665 attcccacagagcgcctgccccctccccttccagc 699
           |||||||||||||||||||||||||||||||||||
Sbjct: 239 attcccacagagcgcctgccccctccccttccagc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 699
Length of database: 1098
Length adjustment: 10
Effective length of query: 689
Effective length of database: 1088
Effective search space:   749632
Effective search space used:   749632
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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