BAC Information

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BAC

Clone NameMSMg01-519B10
Chromosome6 (Build37)
Map Location 56,486,637 - 56,487,200
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042219, Neurod6, LOC100041339, Ccdc129, Gsbs, LOC100041357, Pde1c
Downstream geneEG666688, Lsm5, 5830411G16Rik, LOC100042288, Kbtbd2, Fkbp9, Nt5c3, LOC100042327, V1rc21, V1rc19, V1rc20, EG434016, V1rc32, V1rc30, V1rc1, V1rc3, EG626397, V1rc4, V1rc5, V1rc7, V1rc6, LOC100041445, V1r-ps6, V1rc29, V1rc16, V1rc26, V1rc27, EG434017, LOC666822, Ppm1k
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-519B10.T7 (MSMg01no519_b10.b1)MSMg01-519B10.TJ (MSMg01no519_b10.g1)
ACCAG590444AG590445
length749742
length of high quality
(start - end)		656 (41 - 696)602 (69 - 670)
definitionCHROMAT_FILE: MSMg01no519_b10.b1 PHD_FILE: MSMg01no519_b10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:42 2005CHROMAT_FILE: MSMg01no519_b10.g1 PHD_FILE: MSMg01no519_b10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTCTTCAGCCTTAAGGGCTGTCCTGAAGATCACAGTGTTCTACTATTTT
TCTGAGACATTAGCCATACCCTCACCTCCTTGACTTCTGCTGTCTCTGAT
TATCATGGGGTCATTAACCTTGGCAAAGAGAATGTTTCTCAAAGGAGAAA
TGTGTGTGTGTATCTCTTTCTCTCTACCTATCTACCTATCTATGTTATAT
GTTTATATATTTTATATAAACAAGCCTCATGCCCAGGAACCATCAACACT
CATGGAAGCCCACACCCTGCTGGCTTTGTTCCCTTACATATGGCCAATCA
AGAGTCAGCAGAACAGACTGGAGATCGGTCTTATTGAGGTACTATTTTGG
GAAATGTAATGATAGTCATCTGGTTATGTCTTTAACTATTGGAGATAAGT
ACTGCAAGTCTATCAGCAAAACAATATCAGCAGTTTGAATTGAGATGCTA
TGTGTCTTTACAGATTTTGTCCTCCTATCCTAACACCATCCTACCCCTGT
GTGGGTGGAGAGGTCTCCCAGATGTTCCTATATATTTATTAGGAATTTGT
GACAATGCTTTCTCTGATTGTTCTTTTGGAAGTGATGACTTTCTCCTGTG
CATACATTTTATACCATGAGTTCTGCATTTCTGATAGCTACCAGTCTGTA
TTCATTTTAAAGTTTTGCAGAAATTTATTTTTCTCTTTTTTTTCCAGTT

ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTGATCTTTCCAGAACTTTTATCATGAATGGG
TGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGATCATGTG
GTTTTTGTCTTTGAGTTTGTTTATATAGTGGATTACATTGATGGATTTTC
GTATATTAAACCATCCCTGCATTCCTGGAATAAAACCTACTTGGTCAGGA
TGGATGATTGCTTTAATGTGTTCTTGGATTCGATTAGCGAGAATTTTATT
GAGGATTTTTGCATCGATATTCATAAGAGAAATTGGTCTGAAGTTCTCTA
TCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCA
TAAAATGAGTTGGGTAGAGTACTTTCTACTTCTATCTTGTGAAAAAGTTT
GTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCAC
TAAACCCGTCTGGTCCTGGGCTTTTTTTGGCTGGGAGACTATTTATAACT
GCTTCTATTTCTTTAGGGGATATGGGACTGTTTAGAAGGTCAACTTGATC
CTGATTCAACTTTGGTACCTGGTATCTGTCCAGAAATTTGTCCATTTCGT
CCAGGTTTTCCAGTTTTGTTGAGTATAGCCTTTTGTAGAAAGATCTGATG
GTGTTTTGGATTTCTTCANGATCTGTTGTTATGTCTCCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no519_b10.b1 MSMg01no519_b10.b1 CHROMAT_FILE:
MSMg01no519_b10.b1 PHD_FILE: MSMg01no519_b10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:42 2005
         (656 letters)



>mm_chr6_56486145_56487200
          Length = 1056

 Score = 1083 bits (560), Expect = 0.0
 Identities = 563/564 (99%), Gaps = 1/564 (0%)
 Strand = Plus / Minus

                                                                        
Query: 94   cttctgctgtctctgattatcatggggtcattaaccttggcaaagagaatgtttctcaaa 153
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1056 cttctgctgtctctgattatcatggggtcattaaccttggcaaagagaatgtttctcaaa 997

                                                                        
Query: 154  ggagaaatgtgtgtgtgtatctctttctctctacctatctacctatctatgttatatgtt 213
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 996  ggagaaatgtgtgtgtgtatctctttctctctacctatctacctatctatgttatatgtt 937

                                                                        
Query: 214  tatatattttatataa-acaagcctcatgcccaggaaccatcaacactcatggaagccca 272
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936  tatatattttatataacacaagcctcatgcccaggaaccatcaacactcatggaagccca 877

                                                                        
Query: 273  caccctgctggctttgttcccttacatatggccaatcaagagtcagcagaacagactgga 332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876  caccctgctggctttgttcccttacatatggccaatcaagagtcagcagaacagactgga 817

                                                                        
Query: 333  gatcggtcttattgaggtactattttgggaaatgtaatgatagtcatctggttatgtctt 392
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816  gatcggtcttattgaggtactattttgggaaatgtaatgatagtcatctggttatgtctt 757

                                                                        
Query: 393  taactattggagataagtactgcaagtctatcagcaaaacaatatcagcagtttgaattg 452
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756  taactattggagataagtactgcaagtctatcagcaaaacaatatcagcagtttgaattg 697

                                                                        
Query: 453  agatgctatgtgtctttacagattttgtcctcctatcctaacaccatcctacccctgtgt 512
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696  agatgctatgtgtctttacagattttgtcctcctatcctaacaccatcctacccctgtgt 637

                                                                        
Query: 513  gggtggagaggtctcccagatgttcctatatatttattaggaatttgtgacaatgctttc 572
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636  gggtggagaggtctcccagatgttcctatatatttattaggaatttgtgacaatgctttc 577

                                                                        
Query: 573  tctgattgttcttttggaagtgatgactttctcctgtgcatacattttataccatgagtt 632
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576  tctgattgttcttttggaagtgatgactttctcctgtgcatacattttataccatgagtt 517

                                    
Query: 633  ctgcatttctgatagctaccagtc 656
            ||||||||||||||||||||||||
Sbjct: 516  ctgcatttctgatagctaccagtc 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space:   675716
Effective search space used:   675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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