Query= MSMg01no519_j10.b1 MSMg01no519_j10.b1 CHROMAT_FILE:
MSMg01no519_j10.b1 PHD_FILE: MSMg01no519_j10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:20 2005
(614 letters)
>mm_chr6_95193394_95194408
Length = 1015
Score = 1120 bits (579), Expect = 0.0
Identities = 603/611 (98%), Gaps = 1/611 (0%)
Strand = Plus / Plus
Query: 5 gaattcatttctgcacacaccaactaggagtgcatgtcctgcgtcttgcaaagcccctgt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatttctgcacacaccaactaggagtgcatgtcctgcgtcttgcaaagcccctgt 264
Query: 65 gacctgctctgtggctgactctccagatcagccagtctttgtctcttgtcagagcctctt 124
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 265 gacctgctctgtggctgactctccagatcagccagtctctgtctcttgtcagagcctctt 324
Query: 125 ctccttcattctccacctgcacttctgccttctctgtaacatcaaaatactccttccctg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctccttcattctccacctgcacttctgccttctctgtaacatcaaaatactccttccctg 384
Query: 185 tttcccagctctcctgggtgtgttcctcccctggcacagaggcttccccacacgctgagt 244
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttttccagctctcctgggtgtgttcctcccctggcacagaggcttccccacacgctgagt 444
Query: 245 gatctcattaaatctcttgacttggcagtgggcaaggctggttggatcagcaggtggatg 304
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 445 gatctcattaaatctcttgacttggcagtgggcaaggctggttggatcagaaggtggatg 504
Query: 305 ctaaactcgtcttagagtggaaaggcattggttactctagacttaggaaattaagtaccc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctaaactcgtcttagagtggaaaggcattggttactctagacttaggaaattaagtaccc 564
Query: 365 agaggtttaaaaagagaggcagcccatgcgcccgtttctttcacatgaaagttgggaaca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agaggtttaaaaagagaggcagcccatgcgcccgtttctttcacatgaaagttgggaaca 624
Query: 425 agcattgagcgcagagtgtggaaattcctactatgcatgggtccttattctgttactgag 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agcattgagcgcagagtgtggaaattcctactatgcatgggtccttattctgttactgag 684
Query: 485 gctactctgcaaaatggtttgcaattacacacacatagggatatttctgaatagacttac 544
|||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||
Sbjct: 685 gctactctgcaaaatggtttgcaattacacacacgcaggggtatttctgaatagactcac 744
Query: 545 gcttttctctgaagcaatgttcttcactcattctaaacaagcacatcatttttt-ctatt 603
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 745 gcttttctctgaagcaatgttcttcactcattctaaacaagcacatcatttttttctatt 804
Query: 604 tttttgtgcta 614
|||||||||||
Sbjct: 805 tttttgtgcta 815
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1015
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1005
Effective search space: 607020
Effective search space used: 607020
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no519_j10.g1 MSMg01no519_j10.g1 CHROMAT_FILE:
MSMg01no519_j10.g1 PHD_FILE: MSMg01no519_j10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:20 2005
(629 letters)
>mm_chr6_95323780_95324808
Length = 1029
Score = 1193 bits (617), Expect = 0.0
Identities = 626/629 (99%)
Strand = Plus / Minus
Query: 1 catgttcacagctcatagattctccccaaggaaacttctgcagagttgatctcctctgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 catgttcacagctcatagattctccccaaggaaacttctgcagagttgatctcctctgtg 770
Query: 61 gtttcacatcacggccacgagctttgctgtgggtggtgtgttgaacgtcggctgtgggtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 gtttcacatcacggccacgagctttgctgtgggtggtgtgttgaacgtcggctgtgggtg 710
Query: 121 ggtattacttgctttagtcactcatgacaaatttaaaacacgctgtgttttcaggcaggt 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 709 ggtattacttgctttagtcactcatgccaaatttaaaacacgctgtgttttcaggcaggt 650
Query: 181 gtctataattgccacagcttctaagtgagagagtgacttgtttgctgtcttcccttacaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 gtctataattgccacagcttctaagtgagagagtgacttgtttgctgtcttcccttacaa 590
Query: 241 ctgtaagaaactgagttggaaagctagaaatagggttgaataaatctgatggtatccagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 ctgtaagaaactgagttggaaagctagaaatagggttgaataaatctgatggtatccagg 530
Query: 301 tctgggtttgttagaagagattggcttgtcgacatcatttagagagtcacggaactggag 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 529 tctgggtttgttagaagagattggcttgtcgacatcatttagagagtcacggaactagag 470
Query: 361 tcagctcagaagcattgcagccaagcacaggctccctgactggcagagactgacacacat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 tcagctcagaagcattgcagccaagcacaggctccctgactggcagagactgacacacat 410
Query: 421 gcaattgccctactctgtcttgtatttcttctatccagactctgctagagtctcaggtaa 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 409 gcaattgccctactctgtcttgtatttcttctatccagactctgctagagtctctggtaa 350
Query: 481 aaaggagaaaggactatagacaagaaaatatatgcctggggaattttaaaactatattcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 aaaggagaaaggactatagacaagaaaatatatgcctggggaattttaaaactatattcc 290
Query: 541 ttctaacagagaaaaggtgagctctcccttcttattgaatctggtttctgtgtttggcag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 ttctaacagagaaaaggtgagctctcccttcttattgaatctggtttctgtgtttggcag 230
Query: 601 aaatgatggaaagtcgtcagtttctagtc 629
|||||||||||||||||||||||||||||
Sbjct: 229 aaatgatggaaagtcgtcagtttctagtc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space: 630761
Effective search space used: 630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
