Query= MSMg01no519_o14.b1 MSMg01no519_o14.b1 CHROMAT_FILE:
MSMg01no519_o14.b1 PHD_FILE: MSMg01no519_o14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:47 2005
(662 letters)
>mm_chr6_88663430_88664491
Length = 1062
Score = 1236 bits (639), Expect = 0.0
Identities = 654/659 (99%), Gaps = 1/659 (0%)
Strand = Plus / Minus
Query: 5 gaattc-accaatgttgggccaacagtgttggagggaactgtgtctgtctatgctgaaca 63
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 994 gaattcaaccaacgttgggccaacagtgttggagggaactgtgtctgtctatgctgaaca 935
Query: 64 tatacaaatcacttcctgtcgctgtttcctaccaatgcagtacaccaaccaatgacacag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934 tatacaaatcacttcctgtcgctgtttcctaccaatgcagtacaccaaccaatgacacag 875
Query: 124 cacaggttacatgttagctgtgtgacatgggaggtgcaatgtgacttgaagcatgcataa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 cacaggttacatgttagctgtgtgacatgggaggtgcaatgtgacttgaagcatgcataa 815
Query: 184 gatgaatgaaaatgctctgtcattgtgaacaagcgacccaagcattctctgagttgctca 243
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 814 gatgaatgaaaatgctctgtcattgtgaacaagtgacccaagcattctctgagttgctca 755
Query: 244 tctgaagaggaaggaagattctgaggacggtgagggggcaactctatttcccctcaagaa 303
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 754 tctgaagaggaaggaagattctgaggatggtgagggagcaactctatttcccctcaagaa 695
Query: 304 gtgagcatcatgttgtgtgttctaaggacagctgtcaaagctacccagagcccaggaagt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 gtgagcatcatgttgtgtgttctaaggacagctgtcaaagctacccagagcccaggaagt 635
Query: 364 ataaagactctccctgagcagagtgtgatgctcatcaacatcatgacaaggcaaagcaaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 ataaagactctccctgagcagagtgtgatgctcatcaacatcatgacaaggcaaagcaaa 575
Query: 424 gaattccaggtcctggtcccaatctgtcatttctgttcctgatcttccagcctctgctgg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 gaattccaggtcctggtcccaatctgtcatttctgttcctgatcttccagcctctgctgg 515
Query: 484 gtgacaggtggtcaacaagcatcaaattcctttggctaaataatgcagggctgatgtctg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gtgacaggtggtcaacaagcatcaaattcctttggctaaataatgcagggctgatgtctg 455
Query: 544 tggcttaacctacttacctgccctgtcaatgctgctgtgaaagtccttggcagaagatag 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tggcttaacctacttacctgccctgtcaatgctgctgtgaaagtccttggcagaagatag 395
Query: 604 gcagctacaagcggcagaaaaggagaccacaggagcttaggtaaagctgcctgtaggga 662
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 gcagctacaagcggcagaaaaggagaccacaggagcttaggtaaagctgcctgtaggga 336
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space: 685904
Effective search space used: 685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no519_o14.g1 MSMg01no519_o14.g1 CHROMAT_FILE:
MSMg01no519_o14.g1 PHD_FILE: MSMg01no519_o14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:47 2005
(553 letters)
>mm_chr6_88481806_88482758
Length = 953
Score = 1033 bits (534), Expect = 0.0
Identities = 549/554 (99%), Gaps = 2/554 (0%)
Strand = Plus / Plus
Query: 1 aaacagggcagaaacctggaagcagaagctgatgcaggagccacggaggtgggctgctta 60
||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||
Sbjct: 201 aaacagggcagaaacctggaagcggaagctgatgcaggagccatggaggcgggctgctta 260
Query: 61 ctgggttgcttcccatggcttgctcagcctgctttcttacagaacccaggaccaccagcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgggttgcttcccatggcttgctcagcctgctttcttacagaacccaggaccaccagcc 320
Query: 121 cagggatggcaccacccataatggcctgggccctcccccgctgatcactaaatgaaaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagggatggcaccacccataatggcctgggccctcccccgctgatcactaaatgaaaaaa 380
Query: 181 taccctacagctggatctcatggaggcatttacccaactgatgctccttcctctctgatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taccctacagctggatctcatggaggcatttacccaactgatgctccttcctctctgatg 440
Query: 241 attttagcttgtgccaagttgacacaaaaccagtcagcatacctgggtaatcagcttaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attttagcttgtgccaagttgacacaaaaccagtcagcatacctgggtaatcagcttaca 500
Query: 301 aaaggaggtttatttcggctcctgatttcagagttttctgttcatgtttaagtagctctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaggaggtttatttcggctcctgatttcagagttttctgttcatgtttaagtagctctg 560
Query: 361 ttgtctccacccatggcagtgtagaacatcatgggatattgtcgcagtttctgaatggca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgtctccacccatggcagtgtagaacatcatgggatattgtcgcagtttctgaatggca 620
Query: 421 gcgggggagtgagaaaagaaggcaggatcccaacatcctcttagagggctctgtcccagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcgggggagtgagaaaagaaggcaggatcccaacatcctcttagagggctctgtcccagt 680
Query: 481 caccaacttccactaagtccatctcctaatcattgggactttatgtgtccaccatctnct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 681 caccaacttccactaagtccatctcctaatcattgggactttatgtgtccaccatct-ct 739
Query: 541 -cagtagcacgtgg 553
|||||||||||||
Sbjct: 740 tcagtagcacgtgg 753
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space: 512049
Effective search space used: 512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
