BAC Information

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BAC

Clone NameMSMg01-521C08
Chromosome6 (Build37)
Map Location 55,312,039 - 55,444,523
singlet/doubletdoublet
Overlap geneGhrhr, Adcyap1r1
Upstream geneWipf3, Scrn1, Fkbp14, Plekha8, LOC100041292, 2410066E13Rik, Znrf2, Nod1, A030007L17Rik, Gars, Crhr2, Inmt, C330043M08Rik, Aqp1
Downstream geneLOC100042219, Neurod6, LOC100041339, Ccdc129, Gsbs, LOC100041357, Pde1c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521C08.T7 (MSMg01no521_c08.b1)MSMg01-521C08.TJ (MSMg01no521_c08.g1)
ACCAG592009AG592010
length744743
length of high quality
(start - end)		474 (126 - 599)578 (78 - 655)
definitionCHROMAT_FILE: MSMg01no521_c08.b1 PHD_FILE: MSMg01no521_c08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:24 2005CHROMAT_FILE: MSMg01no521_c08.g1 PHD_FILE: MSMg01no521_c08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,312,039 - 55,312,512)(55,443,946 - 55,444,523)
sequence
TTTTTCTTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTGTGTTCATTTGGACAGACAACTGTTCATTTGAACAAGAGG
GGCAGCTGCCTCAGGGCTGGGATGTCCAAATTCCAGAGTGTCAGAGGCTT
AGAGTTGGGGTTGTTAAACCCGGGGCTTGTCATCCTAGACCTCAAGACCT
AGATCTTGTAGCTTGGTTGTCAAGTACAGAGACAAATTCTCGGCCCTCGA
GGCTAGTGGCCCTGTTGGGGTCAAGAAGACCTCTGAGCTTCAGTCATTGG
AGTGCTTGGTTCTTAGCCCTCCCCAGCTCTCTAGAATACTCAGGACTTGT
TCTCTGTCTTGGCTTTTCACAGCCTCTTGCCTTCTGTTCTCTCAGCTCTC
TGCTCTTTCTTACTGACTTAGTGTTAGTGCCTTCCTTCATGATCTGAACA
GTCTTCGCCCATGTTACTCTCTGGAGCTCCTTGGTGGCCTCCTGGCTCCT
AAGTGGGCTGCAGACACATCAGTATATGCCCAGAGTCTTCCTGTCATGGC
AGTCCTCTGCATCCACCTCTTGTTTCTGGGACTGGAAGCCAAGGATGCTT
CTACTCACGGTGTTACCAGCTAAGCTTCCTCTATTTGGGACAAAGATTAA
AAGTAGACCATCAAAAACCATTCGGGAGGTTGACACACCTGAGAGAAACT
TGCAAGACACAGTGAACACCAGTCAGCTTATCTGCTAGAAGAGG

NNTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGTCCTCCTGTTGCTGAAATGT
GTGGCTGAAGTTGGGATGTGGACACAGCACAGGATCCTAACGCCTGGGCT
TTATGGAGAGATTTCCTCTCAAGTCACTCAGGGGTCCCCGGTCAGGATCC
CAGGCACAGTGACAGGCAGACTTCATTACATCTTCTTACAGCAGCAGACA
GAACTACAGAGGACATCTGCTCTAGTACTCATGCCAGAGACAAACCCTGA
GGTTAGAAGTCAGGGTTCACAAGGTTACAGGGGTGGCAGTAGGTCAGAGG
TCAGGGCTTAGTTTCCAACAAACTATGCCCTCTGCATATACCATGCCTAC
CTGGAAGGAGCCCAGCCCAAGCTCAAACACAAGTCTTTCCCTCTTGCTGA
CGTTCTCTGGAGAGAAGGCAAATACTGTGTAGTGGATTCCAAAGAGTGGG
ATGAGCAGCAGGGTGGAGCGGGCCAGCCGTCTGTCAGGAAAAAGCAAACA
TCTGTTCTGGGGACTGCAGGGCTTGGGAGCATGGAGGGTAGAGGGCCTGA
CGTTGGTCCTAGCTACCCTTCAGTGCTCCTGTTTACAGACTACTTGGCAT
CCTTTACTGGTGCAGAGAGTTTGGAAGCGACCTAGCCCAGGGTCTCTAGG
ATGCTGTATGGGGGCCTCCCCAGTCTGCAGGGTACCTAGTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_c08.b1 MSMg01no521_c08.b1 CHROMAT_FILE:
MSMg01no521_c08.b1 PHD_FILE: MSMg01no521_c08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:24 2005
         (474 letters)



>mm_chr6_55311839_55312712
          Length = 874

 Score =  909 bits (470), Expect = 0.0
 Identities = 473/474 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaaattccagagtgtcagaggcttagagttggggttgttaaacccggggcttgtcatcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccaaattccagagtgtcagaggcttagagttggggttgttaaacccggggcttgtcatcc 260

                                                                       
Query: 61  tagacctcaagacctagatcttgtagcttggttgtcaagtacagagacaaattctcggcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagacctcaagacctagatcttgtagcttggttgtcaagtacagagacaaattctcggcc 320

                                                                       
Query: 121 ctcgaggctagtggccctgttggggtcaagaagacctctgagcttcagtcattggagtgc 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 ctcgaggctagtggccctgttggggtcaagaagacctctgagtttcagtcattggagtgc 380

                                                                       
Query: 181 ttggttcttagccctccccagctctctagaatactcaggacttgttctctgtcttggctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttggttcttagccctccccagctctctagaatactcaggacttgttctctgtcttggctt 440

                                                                       
Query: 241 ttcacagcctcttgccttctgttctctcagctctctgctctttcttactgacttagtgtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcacagcctcttgccttctgttctctcagctctctgctctttcttactgacttagtgtt 500

                                                                       
Query: 301 agtgccttccttcatgatctgaacagtcttcgcccatgttactctctggagctccttggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtgccttccttcatgatctgaacagtcttcgcccatgttactctctggagctccttggt 560

                                                                       
Query: 361 ggcctcctggctcctaagtgggctgcagacacatcagtatatgcccagagtcttcctgtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggcctcctggctcctaagtgggctgcagacacatcagtatatgcccagagtcttcctgtc 620

                                                                 
Query: 421 atggcagtcctctgcatccacctcttgtttctgggactggaagccaaggatgct 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atggcagtcctctgcatccacctcttgtttctgggactggaagccaaggatgct 674


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no521_c08.g1 MSMg01no521_c08.g1 CHROMAT_FILE:
MSMg01no521_c08.g1 PHD_FILE: MSMg01no521_c08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:24 2005
         (578 letters)



>mm_chr6_55443746_55444723
          Length = 978

 Score = 1079 bits (558), Expect = 0.0
 Identities = 573/578 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtcctcctgttgctgaaatgtgtggctgaagttgggatgtggacacagcacaggatcc 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 cagtcctcctgttgctggaatgtgtggctgaagttgggatgtggacacagcacaggatcc 719

                                                                       
Query: 61  taacgcctgggctttatggagagatttcctctcaagtcactcaggggtccccggtcagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 taacgcctgggctttatggagagatttcctctcaagtcactcaggggtccccggtcagga 659

                                                                       
Query: 121 tcccaggcacagtgacaggcagacttcattacatcttcttacagcagcagacagaactac 180
           ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 658 tcccaggcacagtgacaggcaaacttcattacatcttcttacagtagcagacagaactac 599

                                                                       
Query: 181 agaggacatctgctctagtactcatgccagagacaaaccctgaggttagaagtcagggtt 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 agaggacatctgctctggtactcatgccagagacaaaccctgaggttagaagtcagggtt 539

                                                                       
Query: 241 cacaaggttacaggggtggcagtaggtcagaggtcagggcttagtttccaacaaactatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 cacaaggttacaggggtggcagtaggtcagaggtcagggcttagtttccaacaaactatg 479

                                                                       
Query: 301 ccctctgcatataccatgcctacctggaaggagcccagcccaagctcaaacacaagtctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ccctctgcatataccatgcctacctggaaggagcccagcccaagctcaaacacaagtctt 419

                                                                       
Query: 361 tccctcttgctgacgttctctggagagaaggcaaatactgtgtagtggattccaaagagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tccctcttgctgacgttctctggagagaaggcaaatactgtgtagtggattccaaagagt 359

                                                                       
Query: 421 gggatgagcagcagggtggagcgggccagccgtctgtcaggaaaaagcaaacatctgttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gggatgagcagcagggtggagcgggccagccgtctgtcaggaaaaagcaaacatctgttc 299

                                                                       
Query: 481 tggggactgcagggcttgggagcatggagggtagagggcctgacgttggtcctagctacc 540
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 298 tggggactgcagggcttgggagcatggagggcagagggcctgacgttggtcctagctacc 239

                                                 
Query: 541 cttcagtgctcctgtttacagactacttggcatccttt 578
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 238 cttcagtgctcctgtttacagactacttggcatccttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space:   549824
Effective search space used:   549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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