BAC Information

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BAC

Clone NameMSMg01-521I02
Chromosome6 (Build37)
Map Location 9,414,837 - 9,415,500
singlet/doubletsinglet
Overlap genenone
Upstream geneA430035B10Rik, Glcci1, Ica1, LOC100040238, Nxph1
Downstream geneLOC330264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521I02.T7 (MSMg01no521_i02.b1)MSMg01-521I02.TJ (MSMg01no521_i02.g1)
ACCAG592285AG592286
length739682
length of high quality
(start - end)
667 (51 - 717)239 (89 - 327)
definitionCHROMAT_FILE: MSMg01no521_i02.b1 PHD_FILE: MSMg01no521_i02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:52 2005CHROMAT_FILE: MSMg01no521_i02.g1 PHD_FILE: MSMg01no521_i02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGGGNNNNGGGGTTTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACTCCGTTGACCAGGCTGGCCTCGACCTCAGAAATCAGAA
TCAACTCCGTTGACCAGGCTGCCTCTGCCTCCCAAGTGCTGGGATTAAGG
GTGTGTCTGACCACAGCTTGGTGACAGACATGTCTTAATTATCAGTGCAG
TCATCCCTTAACATCAAGTGGGGAATGATTCAGGGATGTAAAACATAGAC
CCGAGTCAAGCTATGTATAGTCAAGTGTGTAGATGTTACCAACTGTGTAT
TTATAGGTAATGCGGGACTTCCTTCACAATACAGACTCTTGATCTTGTTA
GTGGTTCTGCAAAGGCAAGAGAAGACAGAGACTGTGTGCCTTTGTTTCCA
AAAGAAGGTACAGAACAGAACATTCTTCACTGATTCCTTTCCAAAATTGA
AAGTTAGAACAAAGATTCCTTGACCCATTGTGATCTTACTGGTATACAGA
ATAAGAAATTCTGCTACCAGTTTTGCTGTCCCTTCGGGCATACTTTTGTT
TTGTTTAGTAATATTAATAGTAGTAAGTTTTTACTGATATTTTTAAATTT
TGTTTTAACTTTATTCACAGACTTAGCAGAAACAATTGATTTCTGTAAAG
TAACTCTCCATATCTTCTGTGAATAGGAGAAATGTTACCTAAGTAGGATC
AGAGCTGCTGATAGAGAAGTCTGGGAAGAAATGGGTGGN
NNNTTTAAAAANTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAA
TACCGAATGGCAGAAAAGCACCTGAAAAAATGTTCAACATCCTTAATCAT
CAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACTTCACTCCAGTCA
GAATGGCTAAGATCAAAAACTCAGGTGACAGCAGATGTTGGCAAGGATGT
GGAGAAAGGGGAACACTCCTCCATTGTTGGTNGGGATTGCAAGCTTGTGC
AACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTA
CTACCAGAGGATCCCACAATACCTCTCCTGGGCATATATCCAGAAGATGT
CTCTAACTGGTAAAGAAGAACACATGCTCCACTATGTTCATAGCAGCCTT
GGTTATAAAAAACCAGGAGCTGGGAAGAACCCAAAAGCCCCTCAACAGAG
GAATTGGATTCCGAAAATGGGGGTACCTTTTACCCCAAGGGAAAAACTAA
CCCCCACCTTTTTTAAAAAAAACTTGGGNATATTTTTTATAAAAAATTTC
CTTTATGGGGCAAAAGGGGGGGGGGGGCCCCCCTCTGGGAAGGGGATATT
TTCTCCCCCCCCCCGGGAAGGGAAAAAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_i02.b1 MSMg01no521_i02.b1 CHROMAT_FILE:
MSMg01no521_i02.b1 PHD_FILE: MSMg01no521_i02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:52 2005
         (667 letters)



>mm_chr6_9414634_9415700
          Length = 1067

 Score = 1268 bits (656), Expect = 0.0
 Identities = 662/664 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactccgttgaccaggctggcctcgacctcagaaatcagaatcaactccgttga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactccgttgaccaggctggcctcgacctcagaaatcagaatcaactccgttga 263

                                                                       
Query: 64  ccaggctgcctctgcctcccaagtgctgggattaagggtgtgtctgaccacagcttggtg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ccaggctgcctctgcctcccaagtgctgggattaagggtgtgtctgaccacagcttggtg 323

                                                                       
Query: 124 acagacatgtcttaattatcagtgcagtcatcccttaacatcaagtggggaatgattcag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 acagacatgtcttaattatcagtgcagtcatcccttaacatcaagtggggaatgattcag 383

                                                                       
Query: 184 ggatgtaaaacatagacccgagtcaagctatgtatagtcaagtgtgtagatgttaccaac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggatgtaaaacatagacccgagtcaagctatgtatagtcaagtgtgtagatgttaccaac 443

                                                                       
Query: 244 tgtgtatttataggtaatgcgggacttccttcacaatacagactcttgatcttgttagtg 303
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 444 tgtgtatttatagataatgcgggacttccttcacaatacagactcttgatcttgtttgtg 503

                                                                       
Query: 304 gttctgcaaaggcaagagaagacagagactgtgtgcctttgtttccaaaagaaggtacag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gttctgcaaaggcaagagaagacagagactgtgtgcctttgtttccaaaagaaggtacag 563

                                                                       
Query: 364 aacagaacattcttcactgattcctttccaaaattgaaagttagaacaaagattccttga 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aacagaacattcttcactgattcctttccaaaattgaaagttagaacaaagattccttga 623

                                                                       
Query: 424 cccattgtgatcttactggtatacagaataagaaattctgctaccagttttgctgtccct 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cccattgtgatcttactggtatacagaataagaaattctgctaccagttttgctgtccct 683

                                                                       
Query: 484 tcgggcatacttttgttttgtttagtaatattaatagtagtaagtttttactgatatttt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tcgggcatacttttgttttgtttagtaatattaatagtagtaagtttttactgatatttt 743

                                                                       
Query: 544 taaattttgttttaactttattcacagacttagcagaaacaattgatttctgtaaagtaa 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 taaattttgttttaactttattcacagacttagcagaaacaattgatttctgtaaagtaa 803

                                                                       
Query: 604 ctctccatatcttctgtgaataggagaaatgttacctaagtaggatcagagctgctgata 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ctctccatatcttctgtgaataggagaaatgttacctaagtaggatcagagctgctgata 863

               
Query: 664 gaga 667
           ||||
Sbjct: 864 gaga 867


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)