BAC Information

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BAC

Clone NameMSMg01-521L21
Chromosome6 (Build37)
Map Location 135,735,277 - 135,735,896
singlet/doubletsinglet
Overlap geneGrin2b
Upstream geneDusp16, Crebl2, Gpr19, Cdkn1b, 1190002F15Rik, Apold1, Ddx47, Gprc5a, Gprc5d, LOC100043668, Hebp1, 8430419L09Rik, Gsg1, Pbp2, LOC100043890, Emp1
Downstream geneEG668137, LOC545887, E330021D16Rik, EG627022, LOC100043893, Atf7ip, 1100001H23Rik, LOC100043894, Gucy2c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521L21.T7 (MSMg01no521_l21.b1)MSMg01-521L21.TJ (MSMg01no521_l21.g1)
ACCAG592466AG592467
length763759
length of high quality
(start - end)
638 (47 - 684)620 (76 - 695)
definitionCHROMAT_FILE: MSMg01no521_l21.b1 PHD_FILE: MSMg01no521_l21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:10 2005CHROMAT_FILE: MSMg01no521_l21.g1 PHD_FILE: MSMg01no521_l21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTCATCTCTGAGCCCCATTTTTTAATGGGATTATTTGATT
TTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCC
CTATCCGATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCT
TTTTGTCTTATTGACGGTGTCTTTTGCTTTGCAGAAGCTTTGCAATTTTA
TGAGGTCCCATTTATCAATTCTTGATCTTACAGCACAAGCTATTGCTGTC
CTATTCAGGAATTTTTCCCCTGTACCCATATCTTCAAGGCTTTTCCCTAC
TCTCTCCTCTATAAGTTTTAATGTCACTGGTTTTATGTGGAGTTCCATAA
TCCACTTAGATTTGACCTTAGTACAAGGAGATAGAAATGGATCAATTCGC
ATTCTTCTACATGATAACCGCCAGTTGTGCCAGCACCATTTGTTGAAAAT
GCTGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGT
GACCATAGGTGTGTGGATTCATCTCTGGGTCTTCAATTCTGTTCCATTGG
TCTACTTCTCTGTCACTATACCAGTACCATGCAGTTTTTATCACAATTGC
TCTGTAGTACAGTTTTAGGTCCAGCATGGTGATTCCACCAGAGGTTCTTT
TATCCTTGAGAAGACATCAACATTTTTAAGGAAGTGTTTAAAAGTAAATG
ATCCAGGGTAGGT
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAAGTGCTTTACAAACATTCTCATA
GGTGCTTTTCAAGATTTTATTTTTCCTGGTCATATTTTAATCCTGACTAT
GAACACTTTGTTCAGTTTTCTGCTTCGGGTTTTCTCTGAGATAGTTCCAG
TTCACCTCCTTTCTTATCCACATCATCAGGTTTACACACTCCCGTCTTTC
CAGGCTCCCAGACAAGGCTTCCGTTCTCTGGAGGCAAGCGTGCCTGGTTA
CTCCCTTCACTTCGCTTTCAACCAGTCAGTCCCATTTGGAGTGTTTCCAC
AAGTCTCTCCTGCTGTGGAAACAAATACTTGAAACGTTCGCCAGGTTTTC
TACTTAAATCCATTCCTTGATTTTTAATTTTGAGTGCTTATCATTTAAAA
TAACCTGCCTTGCTCTATAAAGAATATGAGGTGGGGTTGAAGGTATGGCA
CATTAGTAGAGCAAATTACTGAAAATGGGCATAGCCCTGAGTTTGCTTCC
CAGCACAGAAAACATCAAATTTAAGGTATTTATCTGAGTACACCCTCCGA
CCTGAGTTGCTATGTATTGAATTGTCTACAAAGGTTTCTTCTTTCAGTCC
TCCATCAATTTGGACCTTTGGGAAACACAGTGAAATTTAAATGTGGTTAA
GACAGAAGAGTGTGTTGTACCAAAACCTCAGCTATTGCCCTTGTTGGAGA
AGCTGGGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_l21.g1 MSMg01no521_l21.g1 CHROMAT_FILE:
MSMg01no521_l21.g1 PHD_FILE: MSMg01no521_l21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:10 2005
         (620 letters)



>mm_chr6_135735077_135736096
          Length = 1020

 Score = 1199 bits (620), Expect = 0.0
 Identities = 620/620 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagtgctttacaaacattctcataggtgcttttcaagattttatttttcctggtcatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 caagtgctttacaaacattctcataggtgcttttcaagattttatttttcctggtcatat 761

                                                                       
Query: 61  tttaatcctgactatgaacactttgttcagttttctgcttcgggttttctctgagatagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 tttaatcctgactatgaacactttgttcagttttctgcttcgggttttctctgagatagt 701

                                                                       
Query: 121 tccagttcacctcctttcttatccacatcatcaggtttacacactcccgtctttccaggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 tccagttcacctcctttcttatccacatcatcaggtttacacactcccgtctttccaggc 641

                                                                       
Query: 181 tcccagacaaggcttccgttctctggaggcaagcgtgcctggttactcccttcacttcgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 tcccagacaaggcttccgttctctggaggcaagcgtgcctggttactcccttcacttcgc 581

                                                                       
Query: 241 tttcaaccagtcagtcccatttggagtgtttccacaagtctctcctgctgtggaaacaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 tttcaaccagtcagtcccatttggagtgtttccacaagtctctcctgctgtggaaacaaa 521

                                                                       
Query: 301 tacttgaaacgttcgccaggttttctacttaaatccattccttgatttttaattttgagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tacttgaaacgttcgccaggttttctacttaaatccattccttgatttttaattttgagt 461

                                                                       
Query: 361 gcttatcatttaaaataacctgccttgctctataaagaatatgaggtggggttgaaggta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gcttatcatttaaaataacctgccttgctctataaagaatatgaggtggggttgaaggta 401

                                                                       
Query: 421 tggcacattagtagagcaaattactgaaaatgggcatagccctgagtttgcttcccagca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tggcacattagtagagcaaattactgaaaatgggcatagccctgagtttgcttcccagca 341

                                                                       
Query: 481 cagaaaacatcaaatttaaggtatttatctgagtacaccctccgacctgagttgctatgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 cagaaaacatcaaatttaaggtatttatctgagtacaccctccgacctgagttgctatgt 281

                                                                       
Query: 541 attgaattgtctacaaaggtttcttctttcagtcctccatcaatttggacctttgggaaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 attgaattgtctacaaaggtttcttctttcagtcctccatcaatttggacctttgggaaa 221

                               
Query: 601 cacagtgaaatttaaatgtg 620
           ||||||||||||||||||||
Sbjct: 220 cacagtgaaatttaaatgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space:   616100
Effective search space used:   616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)