BAC Information

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BAC

Clone NameMSMg01-521M13
Chromosome6 (Build37)
Map Location 101,756,055 - 101,796,879
singlet/doubletdoublet
Overlap genenone
Upstream genePpp4r2, EG545870, LOC100043321, Pdzrn3
Downstream geneEG666084, Cntn3, EG666123
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521M13.T7 (MSMg01no521_m13.b1)MSMg01-521M13.TJ (MSMg01no521_m13.g1)
ACCAG592498AG592499
length751748
length of high quality
(start - end)		532 (220 - 751)454 (225 - 678)
definitionCHROMAT_FILE: MSMg01no521_m13.b1 PHD_FILE: MSMg01no521_m13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:13 2005CHROMAT_FILE: MSMg01no521_m13.g1 PHD_FILE: MSMg01no521_m13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,756,055 - 101,756,585)(101,796,426 - 101,796,879)
sequence
NTTCAATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGAGAGATCCGCG
GAATTCATCTTATTTTTATTCTCTTAACATTATAAATGTTAGCAAGGTTT
ATGCTTTAAATTATTTTCTAGGAATTATTTTAGTCAGCACAAGAGCCTAT
CTTGTTATAGTTTGTATTTTTTTAGTATTGTTTGACCAATTCTTGACATA
CAGCTGGGAGGATAGCAGTCTGAGGGAAATGTTGACAATCAAGGAAATCC
TACTTAGTGACTCAACCACTGATGGGCGTGTGGACTGCTTCTATTACAAA
GAACAATATACTTTATATATTTAGTGATCTCCTTGTAATGAATGTTTTAG
TGATATTTATTGCATATACATATGTAGCAGAATTTTCCCTGTCCAATCAC
TTTAAATATTAATACAGCAAGAAGCCTGTAATTGGACAGGGAAAAGGGAG
GCAGCATGAGTTGTTGCAGAGATGGAGACAGAGGAGACAGGGAGAGAAGA
GAAAAGATGGAGCAAGAGGAAGATAATCCTGATTTTGTATGGCCTTAAAT
AGCCACAGGTAGCTATAAATATCATAAAGGACAGAATAATTGGGATAACT
TGTCTAATCCAGGTGGGCAGTTTGTATCATTATCAATTGGCTCTGAAATT
ATTGTGTGGGTATCTTATGAATTGAGAATTTATTAGTATATAAATCTGAC
TGGTTAATTATAAGCTTCTAGAGTTTTGATTTTACCAGGTTACTGGGAAT
N

ACCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTAAGCTGCAGTCCCATGCCTC
CTCTTTGAGAACTACTCATTTCCTGGGTACCAGCTATGACTGTATGGCAT
ATTCATCATGTTCATAAACTTGTGCTAAATTTTATCACTACTCTGCATTT
TGCTATACTTAAGAGACTATGAGAGCTGAAAAACCATTTTCTTCTAGAAT
TAAATAAAATGAGCTCATGCAATTATTCTTTTTGCAGTAGATTAGATCAT
TTCTCAGGGTCTATTTGCTACTTGTCATACTGACTCCATAGTTACAGTAA
TCTTTTGACCCTTTGACTTTAGACTTGGCTAATTGACCCGTGTTAGTGAG
TAGCATATTAGCAGATATGGCAGAACAGAAGCTTGGAATGTACTGTTATG
GTTTGGCTTGCTCTATTTAATGCTTTTTTTGTGATGAGAACAATTTGAGG
CTGACTCAAGTAGGCAAAGGGTTTCAGGGAATTAAGTGGGAACCAATAAC
TAGCGTGAGTCTGTTCTGTATGAGTCAAACCTCAGTTGACCTGTTAGATG
TAAGAATGGAATTACAAATTCATGCTTAAAGTTTTATTCACTTTTTATGT
TAGATTTTATGTGTAAGTGTTTGCTTCAATGTGTATCTATATGCTATGTT
GTGCCACGCTTTTTAGACCAGAAGAGAGCATCAGATCTCCTGGGGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_m13.b1 MSMg01no521_m13.b1 CHROMAT_FILE:
MSMg01no521_m13.b1 PHD_FILE: MSMg01no521_m13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:13 2005
         (532 letters)



>mm_chr6_101755855_101756786
          Length = 932

 Score = 1019 bits (527), Expect = 0.0
 Identities = 530/531 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgagggaaatgttgacaatcaaggaaatcctacttagtgactcaaccactgatgggcgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgagggaaatgttgacaatcaaggaaatcctacttagtgactcaaccactgatgggcgt 260

                                                                       
Query: 61  gtggactgcttctattacaaagaacaatatactttatatatttagtgatctccttgtaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtggactgcttctattacaaagaacaatatactttatatatttagtgatctccttgtaat 320

                                                                       
Query: 121 gaatgttttagtgatatttattgcatatacatatgtagcagaattttccctgtccaatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaatgttttagtgatatttattgcatatacatatgtagcagaattttccctgtccaatca 380

                                                                       
Query: 181 ctttaaatattaatacagcaagaagcctgtaattggacagggaaaagggaggcagcatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttaaatattaatacagcaagaagcctgtaattggacagggaaaagggaggcagcatga 440

                                                                       
Query: 241 gttgttgcagagatggagacagaggagacagggagagaagagaaaagatggagcaagagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttgttgcagagatggagacagaggagacagggagagaagagaaaagatggagcaagagg 500

                                                                       
Query: 301 aagataatcctgattttgtatggccttaaatagccacaggtagctataaatatcataaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagataatcctgattttgtatggccttaaatagccacaggtagctataaatatcataaag 560

                                                                       
Query: 361 gacagaataattgggataacttgtctaatccaggtgggcagtttgtatcattatcaattg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gacagaataattgggataacttgtctaatccaggtgggcagtttgtatcattatcaattg 620

                                                                       
Query: 421 gctctgaaattattgtgtgggtatcttatgaattgagaatttattagtatataaatctga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctctgaaattattgtgtgggtatcttatgaattgagaatttattagtatataaatctga 680

                                                              
Query: 481 ctggttaattataagcttctagagttttgattttaccaggttactgggaat 531
           |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 681 ctggttaattataagcttctagagttttgattttgccaggttactgggaat 731


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space:   481284
Effective search space used:   481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no521_m13.g1 MSMg01no521_m13.g1 CHROMAT_FILE:
MSMg01no521_m13.g1 PHD_FILE: MSMg01no521_m13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:13 2005
         (454 letters)



>mm_chr6_101796226_101797079
          Length = 854

 Score =  847 bits (438), Expect = 0.0
 Identities = 450/454 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctgaaaaaccattttcttctagaattaaataaaatgagctcatgcaattattctttttg 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 gctgaaaaaccattttctcctagaattaaataaaatgagctcatgcaattattctttttg 595

                                                                       
Query: 61  cagtagattagatcatttctcagggtctatttgctacttgtcatactgactccatagtta 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 594 cagtagattagatcatttctcagggtctatttgctacttgtcaaactgactccatagtta 535

                                                                       
Query: 121 cagtaatcttttgaccctttgactttagacttggctaattgacccgtgttagtgagtagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 cagtaatcttttgaccctttgactttagacttggctaattgacccgtgttagtgagtagc 475

                                                                       
Query: 181 atattagcagatatggcagaacagaagcttggaatgtactgttatggtttggcttgctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 474 atattagcagatatggcagaacagaagcttggaatgtactgttatggcttggcttgctct 415

                                                                       
Query: 241 atttaatgctttttttgtgatgagaacaatttgaggctgactcaagtaggcaaagggttt 300
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 gtttaatgctttttttgtgatgagaacaatttgaggctgactcaagtaggcaaagggttt 355

                                                                       
Query: 301 cagggaattaagtgggaaccaataactagcgtgagtctgttctgtatgagtcaaacctca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 cagggaattaagtgggaaccaataactagcgtgagtctgttctgtatgagtcaaacctca 295

                                                                       
Query: 361 gttgacctgttagatgtaagaatggaattacaaattcatgcttaaagttttattcacttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 gttgacctgttagatgtaagaatggaattacaaattcatgcttaaagttttattcacttt 235

                                             
Query: 421 ttatgttagattttatgtgtaagtgtttgcttca 454
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 ttatgttagattttatgtgtaagtgtttgcttca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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