BAC Information

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BAC

Clone NameMSMg01-521O12
Chromosome6 (Build37)
Map Location 143,956,325 - 144,151,825
singlet/doubletdoublet
Overlap geneSox5
Upstream gene5730419I09Rik, Etnk1, D6Ertd474e
Downstream gene4933425H06Rik, EG665149, Bcat1, Lrmp, Casc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521O12.T7 (MSMg01no521_o12.b1)MSMg01-521O12.TJ (MSMg01no521_o12.g1)
ACCAG592590AG592591
length752744
length of high quality
(start - end)
138 (240 - 377)476 (76 - 551)
definitionCHROMAT_FILE: MSMg01no521_o12.b1 PHD_FILE: MSMg01no521_o12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:22 2005CHROMAT_FILE: MSMg01no521_o12.g1 PHD_FILE: MSMg01no521_o12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,151,688 - 144,151,825)(143,956,325 - 143,956,800)
sequence
TTTTTTATATTGCGGCTGCTATACGACTCCAATTTTGAGAGGATCCGCGG
AATTCAGCTCTGCTGCGATATTGGTACTTTTGTCATTGTCTCGTTATTCT
GAGTTGTTGCTACTCTTCTCTGGCTCTGGCTCGCCAATGGTGCATGCATG
TGTTTCTCCAGGCTGCTTTCCTCGCTGCTTTCCTCTGTAACTTGGGGAAG
GGGCATGGCAGGGACTCCAGGGATCGAGTACTGTGGGACTGCTCGTCAGC
GCGAGCCTCATTGTCTAACCCTACTATGCTGTCACTATGAATTCCACTCT
GCAGCTGTTCAGGCTTATTACTAAATGACGTTTTTCGTAATGCCTCGCAT
GGAAATGTTTTGACTTAAATGAAATGTGGAGTGTGGGTGAACGAAAAGCT
GTTTATTTTTCCTGCGTTAAGGATGAATAGTTCTTTATCGGAGTTAAGAG
ATTTTCTTCCCTCCCCTCTCACGTTCTCTTGGAGAAGGAAGACCTGGGGT
TCCAAATGTGCTTCTCTGGTAGTCTGGTGGCCCTTCTCCTCTCGGAAGCT
GAACTACGAACATTTGTGATTTGATTTTCAGCCTCCCTGGAGTTATATAA
ACGTGCGTAAACTAATAAATCGTGTCTCATTTCTTGTGTTGTGTAGATTT
CCTCGTACCTTAATGGACAAAAAAAATTTTGGCTACTACAGAAATTAGGG
CTAACCTGTCCATGTCTCCTTTTCGTTCCTGTTACGCAAATATGAGCCGC
TT
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGCTCAGCCTCCCATCTCCTC
AGAGGAGCACCAGGATTGGGGGTGTCTACATGTGAGTGTCTGGCTTTTAT
GTGGGTCCAGGGAATTCAGTGTCAGGGCCTAACCACCATGCCATGAGCAG
TTAGTCCCTAAGCTGTCTCTGAGCTCGTGTAATGACAGTAGCTTTTGCAA
AACGAATGTGCCCTTAACAGTTTAAATTTGTCCTTTGAGAGTCTCTGCTC
CCTAGCCTGCTCTTCAGACAGGTTTTCTTGTTGCATACAGTAAGCACTAA
GGGGTATGCATTTGGGCTAAGATATGCTACCAGGGGCAGGCCACAAAATG
ATGTGAGATACTAGGAGACTGGGTAAAAGAGGAGACGATAAATAACGATG
GTCACACATGTGTAATTTAAGATCTTGGTTATTATGCCTTGAGGAGCAGC
CCCCTTTGAATCACACAGAACCTTCGTCATTCATTGTCTCTGGAAAGGCC
TGGTTTTCCTGTTCTCTTAGAGTAATGAGGTACCTGATATTGCACAGAGA
GAGAACACACTATAAAAGGAGAATAAACTGATAGACTGAGCTGAAGTTTC
AGATGCCCTTAATTGCTGAGGCTGGGGAGCGACATTATCTAATAAGGGAA
AAGTAAACTCAATTGCTACATGTGTAACTCTTCTTTTTCTCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_o12.b1 MSMg01no521_o12.b1 CHROMAT_FILE:
MSMg01no521_o12.b1 PHD_FILE: MSMg01no521_o12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:22 2005
         (138 letters)



>mm_chr6_144151488_144152025
          Length = 538

 Score =  259 bits (134), Expect = 4e-74
 Identities = 137/138 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgctcgtcagcgcgagcctcattgtctaaccctactatgctgtcactatgaattccactc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tgctcgtcagcgcgagcctcattgtctaaccctactatgctgtcactatgaattccactc 279

                                                                       
Query: 61  tgcagctgttcaggcttattactaaatgacgtttttcgtaatgcctcgcatggaaatgtt 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tgcagttgttcaggcttattactaaatgacgtttttcgtaatgcctcgcatggaaatgtt 219

                             
Query: 121 ttgacttaaatgaaatgt 138
           ||||||||||||||||||
Sbjct: 218 ttgacttaaatgaaatgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 138
Length of database: 538
Length adjustment: 8
Effective length of query: 130
Effective length of database: 530
Effective search space:    68900
Effective search space used:    68900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no521_o12.g1 MSMg01no521_o12.g1 CHROMAT_FILE:
MSMg01no521_o12.g1 PHD_FILE: MSMg01no521_o12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:22 2005
         (476 letters)



>mm_chr6_143956125_143957000
          Length = 876

 Score =  897 bits (464), Expect = 0.0
 Identities = 473/476 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcaggctcagcctcccatctcctcagaggagcaccaggattgggggtgtctacatgtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcaggctcagcctcccatctcctcagaggagcaccaggattgggggtgtctacatgtga 260

                                                                       
Query: 61  gtgtctggcttttatgtgggtccagggaattcagtgtcagggcctaaccaccatgccatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgtctggcttttatgtgggtccagggaattcagtgtcagggcctaaccaccatgccatg 320

                                                                       
Query: 121 agcagttagtccctaagctgtctctgagctcgtgtaatgacagtagcttttgcaaaacga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcagttagtccctaagctgtctctgagctcgtgtaatgacagtagcttttgcaaaacga 380

                                                                       
Query: 181 atgtgcccttaacagtttaaatttgtcctttgagagtctctgctccctagcctgctcttc 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggtgcccttaacagtttaaatttgtcctttgagagtctctgctccctagcctgctcttc 440

                                                                       
Query: 241 agacaggttttcttgttgcatacagtaagcactaaggggtatgcatttgggctaagatat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 agacaggttttcttgttgcatacagtaagcactaaggggtatgcatttgggctaagagat 500

                                                                       
Query: 301 gctaccaggggcaggccacaaaatgatgtgagatactaggagactgggtaaaagaggaga 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 gctaccaggggcaggccacaaaatgatgtgagatactaggagattgggtaaaagaggaga 560

                                                                       
Query: 361 cgataaataacgatggtcacacatgtgtaatttaagatcttggttattatgccttgagga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cgataaataacgatggtcacacatgtgtaatttaagatcttggttattatgccttgagga 620

                                                                   
Query: 421 gcagccccctttgaatcacacagaaccttcgtcattcattgtctctggaaaggcct 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcagccccctttgaatcacacagaaccttcgtcattcattgtctctggaaaggcct 676


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)