BAC Information

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BAC

Clone NameMSMg01-521P05
Chromosome6 (Build37)
Map Location 140,017,673 - 140,018,170
singlet/doubletsinglet
Overlap genenone
Upstream geneEG632971, LOC100043898, Pik3c2g, Plcz1, Capza3
Downstream geneLOC100042680, LOC100039020, LOC269810, Plekha5, Aebp2, EG664868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521P05.T7 (MSMg01no521_p05.b1)MSMg01-521P05.TJ (MSMg01no521_p05.g1)
ACCAG592624AG592625
length741741
length of high quality
(start - end)
135 (217 - 351)498 (83 - 580)
definitionCHROMAT_FILE: MSMg01no521_p05.b1 PHD_FILE: MSMg01no521_p05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:25 2005CHROMAT_FILE: MSMg01no521_p05.g1 PHD_FILE: MSMg01no521_p05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCATCTCCATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGA
TTCGCGGAATTCTTTTGGATCTTAATATGGATAAGACAGAATCATATATG
GGAAATGTGTCATGTGAATTGGTATTTTCGGTAACAAGACATATGCATCT
GCTGTGACAAAATGTTTCCTGGGGAAATGCAACACATGTGTCTAATCACC
CCGATCGGAAGCTATCACAACAGACAGAAGTATGAGTGCCACCAAAGTCC
AACGTGGTGAACCATGGGATTCACTGGGGTCCCTTACAAGGAGTATGGAT
GAGAGGTCATTCACAGGAATGTAGGTGAGAGGTCATTCACAGGAATTTGG
ATGAGAGGTCACTTACAGGAATATATGTGAGAGGTCACTTCAAGACTCAT
AAATAACTCCAAGACAGCTGCATCACCAAGCCCACCTCAACTATGAATGG
TATGTCCCAAACCTGGGAACCTGGAGCACACTGCCCAGCCTGCACGCAGC
TCAACTAGTTGGAGAGTGTCCTTACCATGCACCTCATTTGACCTAAATCT
CTTCATACCTTTTGTTTGGTTTCTGCTTCTTCCTGGCTCTCTGCTCTCCA
GAGTCTTTACTGCTGCTCTTTTTCCTCCCATAGGACTCTCATCTTTTGCT
GCCTACTTGCGGCATGTAGGGACTAGTTTAACCCCATTACTTTCTAGGAC
TTTCTTTTTTTTTCTCGAGTACTTTCTCCTTCTTTTTTTTG
TTTTCACTATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTGCGTGTTCAAAGAAG
AAACCGTGAGTTAGGATTACACTCTTTTGTCTTTACTTAAATTTGTATCG
CACCGTATGGATGCTTTTCCTTAGGAACACTTCGCTTTGGGAGATCTGAA
TGTCACAGTGTTCCGTTCTTCTGGCTTTGTTTGCAACACTTGTCTTCCTT
CGTATATGAAAGCCTGACATGAATCCTCCATTTACTCTCTGCAGCTCATC
TCACTGCAGACATTAGGGGAAGAAGCACTTCATTGGAAACAGCGCTGCAA
ATACGAATACGCCTGCCTCTGAGGTTTCTCACCCAGGAACTCGTCACTGT
ACTGCACAGGCTGGCTCATTGATGGCGGCTTTCTATTTTTATCTACTACC
CTTTATTTTATGGAGTTACATCAATGCTATGAATGCAAGGCTGTGACATG
GAACCGGAAGGCTGTTTCAACTTTCATAAGCCTTGTGTGGGATTGATAGG
GTTAGAGAAACACACAAGGCTAATGTGAGGGAGCAAAAGGGAGAGTGCAT
ACATACAGAGACTTGATGGAAATGTGGTTATTTTTTAACTTAGTGAGACG
TGCCACTCAATCCTGTGGCTTTGGTGGGAGAATACGTAGAGTAATGAATC
ATATAATGTTTGAATGTTTTTGCTTCANAGGATATCTACAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_p05.g1 MSMg01no521_p05.g1 CHROMAT_FILE:
MSMg01no521_p05.g1 PHD_FILE: MSMg01no521_p05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:26 2005
         (498 letters)



>mm_chr6_140017473_140018370
          Length = 898

 Score =  932 bits (482), Expect = 0.0
 Identities = 494/498 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttgcgtgttcaaagaagaaaccgtgagttaggattacactcttttgtctttacttaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 cttgcgtgttcaaagaagaaaccgtgagttaggattacactcttttgtctttacttaaat 639

                                                                       
Query: 61  ttgtatcgcaccgtatggatgcttttccttaggaacacttcgctttgggagatctgaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 ttgtatcgcaccgtatggatgcttttccttaggaacacttcgctttgggagatctgaatg 579

                                                                       
Query: 121 tcacagtgttccgttcttctggctttgtttgcaacacttgtcttccttcgtatatgaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 tcacagtgttccgttcttctggctttgtttgcaacacttgtcttccttcgtatatgaaag 519

                                                                       
Query: 181 cctgacatgaatcctccatttactctctgcagctcatctcactgcagacattaggggaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 cctgacatgaatcctccatttactctctgcagctcatctcactgcagacattaggggaag 459

                                                                       
Query: 241 aagcacttcattggaaacagcgctgcaaatacgaatacgcctgcctctgaggtttctcac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 aagcacttcattggaaacagcgctgcaaatacgaatacgcctgcctctgaggtttctcac 399

                                                                       
Query: 301 ccaggaactcgtcactgtactgcacaggctggctcattgatggcggctttctatttttat 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 398 ccaggaactcgtcactgtactgcacaggctggctcattgatggtggctttctatttttat 339

                                                                       
Query: 361 ctactaccctttattttatggagttacatcaatgctatgaatgcaaggctgtgacatgga 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 338 ctactaccctttattttatggagttacatcaatgctatgaatgcaaggctgtaacatgga 279

                                                                       
Query: 421 accggaaggctgtttcaactttcataagccttgtgtgggattgatagggttagagaaaca 480
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 278 accggaaggctgtttcaactttcagaagccttgtgtgggattgatagggttagagaaaca 219

                             
Query: 481 cacaaggctaatgtgagg 498
           | ||||||||||||||||
Sbjct: 218 cgcaaggctaatgtgagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space:   433344
Effective search space used:   433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)