BAC Information

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BAC

Clone NameMSMg01-521P06
Chromosome6 (Build37)
Map Location 42,134,697 - 42,135,305
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040359, LOC100040333, Try4, 1810049H19Rik, Try10, Prss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik, Kel, Olfr459, Pip, Sval2, Sval1, Sval3, Sva, Tas2r139
Downstream geneTas2r144, Gstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2, BC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452, Olfr451-ps1, Olfr450, Olfr449, Olfr448, Olfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483, Olfr444, EG622841, Igk-V, Olfr443-ps1, GA_x5J8B7W6337-1183223-1183810, Olfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591, Olfr438, Olfr437, Olfr13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521P06.T7 (MSMg01no521_p06.b1)MSMg01-521P06.TJ (MSMg01no521_p06.g1)
ACCAG592626AG592627
length750739
length of high quality
(start - end)
72 (279 - 350)579 (82 - 660)
definitionCHROMAT_FILE: MSMg01no521_p06.b1 PHD_FILE: MSMg01no521_p06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:26 2005CHROMAT_FILE: MSMg01no521_p06.g1 PHD_FILE: MSMg01no521_p06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCATCCCTAATAACTCCGGTCGTCTCCACCACTCTTTTTTTCCTGAGGAC
CCGCGGTAACTCCAACTCTGTTCCAATACAGCCTATGACTTACGATAAAG
GAAGGAGGATTGGAAATCAGTAAGAAAGGAAAGGAAGCGGGGGCATGTGT
GAGGAAGAAAAGGAACGCTACATTTTTGTAAGCAGATGCCTGGCTCACAG
GTTAGTTAGCATGAGAATACTCCAACCTTGCAAACCACTCCTGCGGAAAG
TGGAGCACAAACAGCCCACTGTGTCGGCCCTTTTATCTCAGCAGGCACTT
CCTCAACCACCAGCTCTCTGCTCTTTGTTGTATTTGAAGCCATCGGCTCA
ACAGTTATGCCACTTCGCAGAAAACTCCTTTTCTTCCTGGCCTGTTTGGA
AGGCCGCTCTTGATATGAGGACATCAATAAATCCTTCTACCTCACAGCCT
ACCCATCTTTATTATTCCTCGCTAATATGTGAAAGTCCTACCTCTAATCC
AGTCCATTGAAAAGAAGTGTTTACCTGGCATTCTCTGATTTTCGCAATAT
CTAACTCCCATGGCTGAAATACCTTGCAGCACCTGCCGTCACCAACCTTG
ATTACTATGTGGCTCTCCCACTGTATGCGCTGTTTTGTGCGAGGAATGGA
TAGATCTACCAAGCCGTATATTTTTCTCCCCACCTTTTATCTGCTCTTTG
TCCTTCTTTTCGCAAATTTTTTTTGCCCCACCTTGCTCTTCTATTTTATT

NCCCCGCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTACCTAGTACCTAAGCT
ATCAGGGAACTCTCAACTGCCTATAACTCCAACTCAAGGAGATCTGACAT
CCTCTTCCACCTTCTGTAGGCACTTTCATGCATGCCTACACACACACACA
CACACACACACACACACACACACACACAAATAAATAAATAAATAAACATG
AAATAATTTTTCTAAGACTTTGATTCTCTATTTCGGAATTTGGAGTTCTG
GATATCATTGTGTTATTTGGGAAAATTCTATGGTCTAAACTATGCAATTT
ATAAAACACTGCTTGCAAGAGAAATGATTAATCTAGAAATGGATATGCCA
CCAGCTGATCTTCACAGTGCCATGAGCAGGAATCAAGGTACCACACTGCA
TTCAGCTCTTTATGGTATTATAGGCAGCTGAAGACACTCTCACTTTAAGA
CTCACTAAACTAGTGAGGCATCACCTCTATATGGATATCACACTCCAAAA
ACAAGGCAGTGTTTCTCAACCAGGGAACTTTTTTTACAAGGGATATTTAG
CACTGTCTATCTGAAAACACCATGGCTTTTTATAATTTGCCCAAGAGAGG
TTATCTCTACAAGATCAGAATTTTAAAAATAGATTCTAATCCTATGAGAG
AAAAAAGAGGAGTTTCAGAATGCCCCACAGCTACTGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_p06.g1 MSMg01no521_p06.g1 CHROMAT_FILE:
MSMg01no521_p06.g1 PHD_FILE: MSMg01no521_p06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:26 2005
         (579 letters)



>mm_chr6_42134527_42135505
          Length = 979

 Score = 1035 bits (535), Expect = 0.0
 Identities = 576/609 (94%), Gaps = 30/609 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtacctagtacctaagctatcagggaactctcaactgcctataactccaactcaaggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 agtacctagtacctaagctatcagggaactctcaactgcctataactccaactcaaggag 230

                                                                       
Query: 61  atctgacatcctcttccaccttctgtaggcactttcatgcatgcctacacacacacacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 atctgacatcctcttccaccttctgtaggcactttcatgcatgcctacacacacacacac 290

                                                                       
Query: 121 acacacacacacacacacacacacac------------------------------aaat 150
           ||||||||||||||||||||||||||                              ||||
Sbjct: 291 acacacacacacacacacacacacacataaataaataaataaataaataaataaataaat 350

                                                                       
Query: 151 aaataaataaataaacatgaaataatttttctaagactttgattctctatttcggaattt 210
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 aaataaataaataaatatgaaataatttttctaagactttgattctctatttcggaattt 410

                                                                       
Query: 211 ggagttctggatatcattgtgttatttgggaaaattctatggtctaaactatgcaattta 270
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 ggagttctggatatcattgtgttatttgggaaaattctatggtctaaactatgcaattta 470

                                                                       
Query: 271 taaaacactgcttgcaagagaaatgattaatctagaaatggatatgccaccagctgatct 330
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 taaaacactgcttgcaagagaaatgattaatctagaaatggatatgccaccagctgatct 530

                                                                       
Query: 331 tcacagtgccatgagcaggaatcaaggtaccacactgcattcagctctttatggtattat 390
           |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 531 tcacagtgccatgagcaggaatcaaggtaccacactgcattctgttctttatggtattat 590

                                                                       
Query: 391 aggcagctgaagacactctcactttaagactcactaaactagtgaggcatcacctctata 450
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 aggcagctgaagacactctcactttaagactcactaaactagtgaggcatcacctctata 650

                                                                       
Query: 451 tggatatcacactccaaaaacaaggcagtgtttctcaaccagggaactttttttacaagg 510
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 tggatatcacactccaaaaacaaggcagtgtttctcaaccagggaactttttttacaagg 710

                                                                       
Query: 511 gatatttagcactgtctatctgaaaacaccatggctttttataatttgcccaagagaggt 570
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 gatatttagcactgtctatctgaaaacaccatggctttttataatttgcccaagagaggt 770

                    
Query: 571 tatctctac 579
           |||||||||
Sbjct: 771 tatctctac 779


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space:   551361
Effective search space used:   551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)