NNNTTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGC
CGCGGAATTCCCAAGCTTCCAACCATTCCATTCTGCTTCTAGGAGAAATT
CTATTTTACAAGTTGGCTTGAGAGTCTCATACATATTTCATAGCTGGTAA
TAGGTATTTCCCAATATACATTTCATGTTCCTGTGTAAGAAGGAATTCAC
AGCAGCTGTTGCATAATTTTTAACTTACAAAGGCCTTAATCTTCTTGATG
TGTAAAAATGTAAGTGATAAAACAGGACAAAAATAAAAACAGTTTGGAAA
TAGCAATGTCTTCAAAAATTAAGTCTGGATATCCCACTACAATTCCAATG
GCAAGCATATATTCTGGGATTGGGGAGTTGGCTCAGAGGGTTAAGTTCTC
ATAAGCAATGTGTGAAGACCTGAATTTGGATTGTAGAACCCAGGCAAACC
AGCATCTATAATGTTATGACTCTTAAGAGAATTATGGAAGAGTGGACAGG
ACAATTCCAAAAACCTATGGATCAACCAGCCAGGCAGACTCAGAGAAGGT
GAAAAGGAGGGACTGAGATATTCACAATTACTCTGTAACTGCAACATGTA
AGCATTTGTACTTTTACACACACACACACACACACACACACACACACACA
CACACACACACACACACGACATAAACAGGGGTGCTTAATGAAGAAGCTTT
AAAAAGGAAGACTCATATCCTATAAAGCTTTTCAATTTTATTAATATATA
TTCC

GAGCACAATGATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGAAAGTTAATTTCTATT
TCTTCCATGATCCAGTGGTCATTCAGTAGAGAATTTTTTCAGTTTTCATG
AGTTTGGAGGATTTCTGTGGTTGCTGTTGTTGTTGACTTCTAGTTTTAAT
CCATGATAGACTGATAATATACAAGGTGTTATTTCAATTTTGTTAGGCCA
ATTGAGTCTTACTTTGTAACCGACTATATGGTCTATTTTGGAAATAGTTC
CAAGAGGTGCTGAGGAAAATGTATACTCTTTCATGTTTAGGTAAGATGTT
TTATGGATTTATGTTAGGTCCATTTAATTAATAATCTCTGCTAATATCAT
TATTTTTCTGTTTAATTTTTGTGCCCATTACCTGTCTATTGGTGAGGATC
AACTCCTCTTATTTTCATGTTGTTGTTGGTGGTTCTGTGTGTGTATGTGT
GTATGTGTGTGTGTGTGTTTCTGCATCTCTGAATTTCTGGTGTTAGGTTA
TTTACTTTCTTTGTTTTCCTGGGTTTAATTATTATCTTTGATCTGGTGCT
TTTCCTATTGAATCTTTTGTATACCCGGTATTTTTGTCTAGGATCTTTTT
TAATTTTTTTTAAATTTGGATACATTATTGTTTTCTCCTATTTTTGGATG
ATTTGTAAGTTCTTTCTTTTGTTATATTTATTCTTTGTTTAGTAATTTTT
TGTGTCTTTTAAACAA

Query= MSMg01no522_m13.b1 MSMg01no522_m13.b1 CHROMAT_FILE:
MSMg01no522_m13.b1 PHD_FILE: MSMg01no522_m13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:29 2005
         (600 letters)



>mm_chr6_104011677_104012676
          Length = 1000

 Score =  922 bits (477), Expect = 0.0
 Identities = 489/493 (99%), Gaps = 2/493 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccattccattctgcttctaggagaaattctattttacaagttggcttgagagtctcatac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ccattccattctgcttctaggagaaattctattttacaagttggcttgagagtctcatac 434

                                                                       
Query: 61  atatttcatagctggtaataggtatttcccaatatacatttcatgttcctgtgtaagaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 atatttcatagctggtaataggtatttcccaatatacatttcatgttcctgtgtaagaag 374

                                                                       
Query: 121 gaattcacagcagctgttgcataatttttaacttacaaaggccttaatcttcttgatgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gaattcacagcagctgttgcataatttttaacttacaaaggccttaatcttcttgatgtg 314

                                                                       
Query: 181 taaaaatgtaagtgataaaacaggacaaaaataaaaacagtttggaaatagcaatgtctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 taaaaatgtaagtgataaaacaggacaaaaataaaaacagtttggaaatagcaatgtctt 254

                                                                       
Query: 241 caaaaattaagtctggatatcccactacaattccaatggcaagcatatattctgggattg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 caaaaattaagtctggatatcccactacaattccaatggcaagcatatattctgggattg 194

                                                                       
Query: 301 gggagttggctcagagggttaagttctcataagcaatgtgtgaagacctgaatttggatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 gggagttggctcagagggttaagttctcataagcaatgtgtgaagacctgaatttggatt 134

                                                                       
Query: 361 gtagaacccaggcaaa-ccagcatctataatgttatgactcttaagagaattatggaaga 419
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 gtagaacccaggcaaagccagcatctataatgttatgactcttaagagaattatggaaga 74

                                                                       
Query: 420 gtggacaggacaattcc-aaaaacctatggatcaaccagccaggcagactcagagaaggt 478
           |||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 73  gtgggcaggacaattccaaaaaacctatggatcaaccagccaggcagactcaaagaaggt 14

                        
Query: 479 gaaaaggagggac 491
           |||||||||||||
Sbjct: 13  gaaaaggagggac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space:   584100
Effective search space used:   584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)