BAC Information

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BAC

Clone NameMSMg01-523B12
Chromosome6 (Build37)
Map Location 107,365,567 - 107,524,413
singlet/doubletdoublet
Overlap geneLrrn1
Upstream geneCntn4, Il5ra, Trnt1, Crbn, Ppia-ps6_1128.1
Downstream geneSetmar, Sumf1, LOC100043718, Itpr1, LOC677205
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-523B12.T7 (MSMg01no523_b12.b1)MSMg01-523B12.TJ (MSMg01no523_b12.g1)
ACCAG593497AG593498
length749744
length of high quality
(start - end)
701 (49 - 749)648 (79 - 726)
definitionCHROMAT_FILE: MSMg01no523_b12.b1 PHD_FILE: MSMg01no523_b12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:54 2005CHROMAT_FILE: MSMg01no523_b12.g1 PHD_FILE: MSMg01no523_b12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,523,715 - 107,524,413)(107,365,567 - 107,366,211)
sequence
TTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTGGTTTGGAGGGCTGACATCTGTCTCAGGTTGGAATCCTA
AGTCAGACCCTGTACTGGCCTCACTGGGGGGCATTGCTATCTTCAGCTCC
ACTGTTCCTGCTTCAGGCACTCATATATACTTGAATTAATGCATGAGCAT
GCATAGAGTCAAACGACTACACTATTTAATCATGCAGTTGAAGTTCTCAT
TTCTGATTCTTAGAGGCTGCTTGGTTTCAGGATCTTGTCCCACTTTCTGA
AAGTGCTTGTGTTAGAGGATATGAGGTTTAAGTAAACCATCTAGCATAGT
TCCTTAGAGATGTCTACATAGAAAATCTTCCTCATGTTTTCTTTCCTAAG
GTGTTGCTCTAAATTACACATATTTGTCCATTATGACAAGGTCTTCAATT
TCCTTGAGCTCATTATGTCTTTGTGTCTATTAGTGAGATGTGCTAATATG
CTCTAGCACATTCAAAATGTCACCTTTTAAGATACCAGCTTATAAGGAAT
TTGTGATCATTCTGTCAGGGACCAGGATGGATCTCTCATCAGTGTAATAC
CAGAGCCTCTTGTGTGCTACCTCTATCTTTAGCCATATGCTTCATCTGCC
AGTCAAGAGATGCCCCCCTTCCATCCTAGAAGGGTGCTGGGCAGAGAAAA
CTGCACGTGAGTTTGTAACTCGCTGATACCTACCCGTAGAGGTCTTGCN
NTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTATTCCTTTAGAATTCAAGAA
TCATCTATCACTCACTCACCAAAGATATAAGACTCCCCCAAGCAACCACT
TTGTTCCATTCACTGCGCAGCTGTAACATGTCAGGTACTGTGCTAAGTAT
TCCCTTACATCATTTTCCCTGACAGGCACACTCCTGTCTTGACTGCATTA
TGGCAAAATACTTTAACCCTGCCTCTGTTCTTTGCTTGGGACCATATGTG
GAAATCAAAATCTGCATCCCGATTCATTCTGCCTAATTCCCTAGAGTCAT
AAGGTGCTGATATAACTCTTCTACATGTCAGCTCTTCAAATGATGTTAGC
CAGCAAAGACCCCGTCTCATCTCCACATTTACCAGAAACTCTATGTTTAA
CTCTTGTTAAATTCTCTGTCTTCAGTACCAAGGACAGCGCCTAGCATGTT
TAAAATAATTTAGTTGATAAATTGAATTCAGGTTCTCATGCTTATAGGTA
TACACTTGGCCTACTGAGTCATCCCCCCAACCCCCAACGCACACACATGC
ACTATTTTGTATATATTTTTTAATCATATCCGGTGTGGTTCATTGTGCCT
GCCTCACTGGTTTCATTTATGTTGGCCAGGCATTTCCTAACATGGCTTCT
CGCACCTCCAATTTCAACCCTCTTACAAAGCTCATTGGCCAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no523_b12.b1 MSMg01no523_b12.b1 CHROMAT_FILE:
MSMg01no523_b12.b1 PHD_FILE: MSMg01no523_b12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:54 2005
         (701 letters)



>mm_chr6_107523511_107524614
          Length = 1104

 Score = 1313 bits (679), Expect = 0.0
 Identities = 693/699 (99%), Gaps = 3/699 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttggtttggagggctgacatctgtctcaggttggaatcctaagtcagaccctg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903 gaattctttggtttggagggctgacatctgtctcaggttggaatcctaagtcagaccctg 844

                                                                       
Query: 65  tactggcctcactggggggcattgctatcttcagctccactgttcctgcttcaggcactc 124
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 tactggcctcactggtgggcattgctatcttcagctccactgttcctgcttcaggcactc 784

                                                                       
Query: 125 atatatacttgaattaatgcatgagcatgcatagagtcaaacgactacactatttaatca 184
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 783 atatatacttgaattaatgcatgagcatgcatagagtcgaacgactacactatttaatca 724

                                                                       
Query: 185 tgcagttgaagttctcatttctgattcttagaggctgcttggtttcaggatcttgtccca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 tgcagttgaagttctcatttctgattcttagaggctgcttggtttcaggatcttgtccca 664

                                                                       
Query: 245 ctttctgaaagtgcttgtgttagaggatatgaggtttaagtaaaccatctagcatagttc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 ctttctgaaagtgcttgtgttagaggatatgaggtttaagtaaaccatctagcatagttc 604

                                                                       
Query: 305 cttagagatgtctacatagaaaatcttcctcatgttttctttcctaaggtgttgctctaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 cttagagatgtctacatagaaaatcttcctcatgttttctttcctaaggtgttgctctaa 544

                                                                       
Query: 365 attacacatatttgtccattatgacaaggtcttcaatttccttgagctcattatgtcttt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 attacacatatttgtccattatgacaaggtcttcaatttccttgagctcattatgtcttt 484

                                                                       
Query: 425 gtgtctattagtgagatgtgctaatatgctctagcacattcaaaatgtcaccttttaaga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gtgtctattagtgagatgtgctaatatgctctagcacattcaaaatgtcaccttttaaga 424

                                                                       
Query: 485 taccagcttataaggaatttgtgatcattctgtcagggaccaggatggatctctcatcag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 taccagcttataaggaatttgtgatcattctgtcagggaccaggatggatctctcatcag 364

                                                                       
Query: 545 tgtaat---accagagcctcttgtgtgctacctctatctttagccatatgcttcatctgc 601
           ||||||   |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 363 tgtaatcacaccagagcctcttgtgtgctgcctctatctttagccatatgcttcatctgc 304

                                                                       
Query: 602 cagtcaagagatgccccccttccatcctagaagggtgctgggcagagaaaactgcacgtg 661
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 cagtcaagagatgccccccttccatcctagaagggtgctgggcagagaaaactgcacgtg 244

                                                  
Query: 662 agtttgtaactcgctgatacctacccgtagaggtcttgc 700
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 243 agtttgtaactcgctgatacctacccgtagaggtcttgc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1104
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1094
Effective search space:   755954
Effective search space used:   755954
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
Query= MSMg01no523_b12.g1 MSMg01no523_b12.g1 CHROMAT_FILE:
MSMg01no523_b12.g1 PHD_FILE: MSMg01no523_b12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:54 2005
         (648 letters)



>mm_chr6_107365367_107366413
          Length = 1047

 Score = 1151 bits (595), Expect = 0.0
 Identities = 634/647 (97%), Gaps = 3/647 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttattcctttagaattcaagaatcatctatcactcactcaccaaagatataagactcccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttattcctttagaattcaagaatcatctatcactcactcaccaaagatataagactcccc 260

                                                                       
Query: 61  caagcaaccactttgttccattcactgcgcagctgtaacatgtcaggtactgtgctaagt 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caagcaaccactttgtttcattcactgcgcagctgtaacatgtcaggtactgtgctaagt 320

                                                                       
Query: 121 attcccttacatcattttccctgacaggcacactcctgtcttgactgcattatggcaaaa 180
           |||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||
Sbjct: 321 attcccttacatcattttccctgacaggcacacttctgacttggctgcattatggcaaaa 380

                                                                       
Query: 181 tactttaaccctgcctctgttctttgcttgggaccatatgtggaaatcaaaatctgcatc 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 tactttaaccctgcctctgttctttgcttgggaccatatgtgaaaatcaaaatctgcatc 440

                                                                       
Query: 241 ccgattcattctgcctaattccctagagtcataaggtgctgatataactcttctacatgt 300
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 ccgattcattctgcctaattccctggagtcataaggtgctgatataactcttctacatgt 500

                                                                       
Query: 301 cagctcttcaaatgatgttagccagcaaagaccccgtctcatctccacatttaccagaaa 360
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 501 cagctcttcaaatgatgttagccagcaaagaccccatctcatctccacatttaccagaaa 560

                                                                       
Query: 361 ctctatgtttaactcttgttaaattctctgtcttcagtaccaaggacagcgcctagcatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctctatgtttaactcttgttaaattctctgtcttcagtaccaaggacagcgcctagcatg 620

                                                                       
Query: 421 tttaaaataatttagttgataaattgaattcaggttctcatgcttataggtatacacttg 480
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tt-aaaataatttagttgataaattgaattcaggttctcatgcttataggtatacacttg 679

                                                                       
Query: 481 gcctactgagtcatccccccaacccccaacgcacacacatgcactattttgtatatat-t 539
           || |||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
Sbjct: 680 gcttactgagtcatccccc-accccccaacgcacacacatgcactattttgtatatatat 738

                                                                       
Query: 540 ttttaatcatatccggtgtggttcattgtgcctgcctcactggtttcatttatgttggcc 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ttttaatcatatccggtgtggttcattgtgcctgcctcactggtttcatttatgttggcc 798

                                                          
Query: 600 aggcatttcctaacatggcttctcgcacctccaatttcaaccctctt 646
           |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 799 aggcatttcctaacatggcttctcacacctccaatttcaaccctctt 845


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1047
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1037
Effective search space:   661606
Effective search space used:   661606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)