Query= MSMg01no523_b12.b1 MSMg01no523_b12.b1 CHROMAT_FILE:
MSMg01no523_b12.b1 PHD_FILE: MSMg01no523_b12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:54 2005
(701 letters)
>mm_chr6_107523511_107524614
Length = 1104
Score = 1313 bits (679), Expect = 0.0
Identities = 693/699 (99%), Gaps = 3/699 (0%)
Strand = Plus / Minus
Query: 5 gaattctttggtttggagggctgacatctgtctcaggttggaatcctaagtcagaccctg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903 gaattctttggtttggagggctgacatctgtctcaggttggaatcctaagtcagaccctg 844
Query: 65 tactggcctcactggggggcattgctatcttcagctccactgttcctgcttcaggcactc 124
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 tactggcctcactggtgggcattgctatcttcagctccactgttcctgcttcaggcactc 784
Query: 125 atatatacttgaattaatgcatgagcatgcatagagtcaaacgactacactatttaatca 184
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 783 atatatacttgaattaatgcatgagcatgcatagagtcgaacgactacactatttaatca 724
Query: 185 tgcagttgaagttctcatttctgattcttagaggctgcttggtttcaggatcttgtccca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 tgcagttgaagttctcatttctgattcttagaggctgcttggtttcaggatcttgtccca 664
Query: 245 ctttctgaaagtgcttgtgttagaggatatgaggtttaagtaaaccatctagcatagttc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 ctttctgaaagtgcttgtgttagaggatatgaggtttaagtaaaccatctagcatagttc 604
Query: 305 cttagagatgtctacatagaaaatcttcctcatgttttctttcctaaggtgttgctctaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 cttagagatgtctacatagaaaatcttcctcatgttttctttcctaaggtgttgctctaa 544
Query: 365 attacacatatttgtccattatgacaaggtcttcaatttccttgagctcattatgtcttt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 attacacatatttgtccattatgacaaggtcttcaatttccttgagctcattatgtcttt 484
Query: 425 gtgtctattagtgagatgtgctaatatgctctagcacattcaaaatgtcaccttttaaga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gtgtctattagtgagatgtgctaatatgctctagcacattcaaaatgtcaccttttaaga 424
Query: 485 taccagcttataaggaatttgtgatcattctgtcagggaccaggatggatctctcatcag 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 taccagcttataaggaatttgtgatcattctgtcagggaccaggatggatctctcatcag 364
Query: 545 tgtaat---accagagcctcttgtgtgctacctctatctttagccatatgcttcatctgc 601
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 363 tgtaatcacaccagagcctcttgtgtgctgcctctatctttagccatatgcttcatctgc 304
Query: 602 cagtcaagagatgccccccttccatcctagaagggtgctgggcagagaaaactgcacgtg 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 cagtcaagagatgccccccttccatcctagaagggtgctgggcagagaaaactgcacgtg 244
Query: 662 agtttgtaactcgctgatacctacccgtagaggtcttgc 700
|||||||||||||||||||||||||||||||||||||||
Sbjct: 243 agtttgtaactcgctgatacctacccgtagaggtcttgc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1104
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1094
Effective search space: 755954
Effective search space used: 755954
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no523_b12.g1 MSMg01no523_b12.g1 CHROMAT_FILE:
MSMg01no523_b12.g1 PHD_FILE: MSMg01no523_b12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:54 2005
(648 letters)
>mm_chr6_107365367_107366413
Length = 1047
Score = 1151 bits (595), Expect = 0.0
Identities = 634/647 (97%), Gaps = 3/647 (0%)
Strand = Plus / Plus
Query: 1 ttattcctttagaattcaagaatcatctatcactcactcaccaaagatataagactcccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttattcctttagaattcaagaatcatctatcactcactcaccaaagatataagactcccc 260
Query: 61 caagcaaccactttgttccattcactgcgcagctgtaacatgtcaggtactgtgctaagt 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caagcaaccactttgtttcattcactgcgcagctgtaacatgtcaggtactgtgctaagt 320
Query: 121 attcccttacatcattttccctgacaggcacactcctgtcttgactgcattatggcaaaa 180
|||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||
Sbjct: 321 attcccttacatcattttccctgacaggcacacttctgacttggctgcattatggcaaaa 380
Query: 181 tactttaaccctgcctctgttctttgcttgggaccatatgtggaaatcaaaatctgcatc 240
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 tactttaaccctgcctctgttctttgcttgggaccatatgtgaaaatcaaaatctgcatc 440
Query: 241 ccgattcattctgcctaattccctagagtcataaggtgctgatataactcttctacatgt 300
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 ccgattcattctgcctaattccctggagtcataaggtgctgatataactcttctacatgt 500
Query: 301 cagctcttcaaatgatgttagccagcaaagaccccgtctcatctccacatttaccagaaa 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 501 cagctcttcaaatgatgttagccagcaaagaccccatctcatctccacatttaccagaaa 560
Query: 361 ctctatgtttaactcttgttaaattctctgtcttcagtaccaaggacagcgcctagcatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctctatgtttaactcttgttaaattctctgtcttcagtaccaaggacagcgcctagcatg 620
Query: 421 tttaaaataatttagttgataaattgaattcaggttctcatgcttataggtatacacttg 480
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tt-aaaataatttagttgataaattgaattcaggttctcatgcttataggtatacacttg 679
Query: 481 gcctactgagtcatccccccaacccccaacgcacacacatgcactattttgtatatat-t 539
|| |||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
Sbjct: 680 gcttactgagtcatccccc-accccccaacgcacacacatgcactattttgtatatatat 738
Query: 540 ttttaatcatatccggtgtggttcattgtgcctgcctcactggtttcatttatgttggcc 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ttttaatcatatccggtgtggttcattgtgcctgcctcactggtttcatttatgttggcc 798
Query: 600 aggcatttcctaacatggcttctcgcacctccaatttcaaccctctt 646
|||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 799 aggcatttcctaacatggcttctcacacctccaatttcaaccctctt 845
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1047
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1037
Effective search space: 661606
Effective search space used: 661606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|