Query= MSMg01no523_g22.b1 MSMg01no523_g22.b1 CHROMAT_FILE:
MSMg01no523_g22.b1 PHD_FILE: MSMg01no523_g22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:20 2005
(568 letters)
>mm_chr6_113049289_113050257
Length = 969
Score = 1067 bits (552), Expect = 0.0
Identities = 561/566 (99%), Gaps = 5/566 (0%)
Strand = Plus / Plus
Query: 6 gaattctgctcatctt---gtaaaaatatttttggtgtttcatttgaaatataattatga 62
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctgctcatc--agagtaaaaatatttttggtgtttcatttgaaatataattatga 263
Query: 63 gtggtggagactttaaacacagttaaaggaaagcagggaagacaaagggctctctaagaa 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtggtggagactttaaacacagttaaaggaaagcagggaagacaaagggctctctaagaa 323
Query: 123 aagggcttgggatgcgtggggtagggatattccctttattttatcagagactgaaatgga 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aagggcttgggatgcgtggggtagggatattccctttattttatcagagactgaaatgga 383
Query: 183 agaaatttgacattctggtggcttatggggagctgctcagagattgcttcttggctgagt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agaaatttgacattctggtggcttatggggagctgctcagagattgcttcttggctgagt 443
Query: 243 tgctgtctgcaaaggctgctaacaatcgcttgtctggcagcagatcttgttcatcaggat 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgctgtctgcaaaggctgctaacaatcgcttgtctggcagcagatcttgttcatcaggat 503
Query: 303 tgcatcatctctgggagagtggccaaggtccacagcctcagtacaaagactgtctgaagc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgcatcatctctgggagagtggccaaggtccacagcctcagtacaaagactgtctgaagc 563
Query: 363 atacgaggcctgttctctttctaaagctgcactcttcttcctgccagtcctcttcacagg 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 atacgaggcctgttctctttctaaagctgcactcttcttcctgccagtcctcttcacagg 623
Query: 423 attgctaaagctgacttgtgcgtttctttcattgggttgactgtttactggtctcttgtc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 attgctaaagctgacttgtgcgtttctttcattgggttgactgtttactggtctcttgtc 683
Query: 483 tcccagctgcttccgcctcacctgtctgatacatttcttctgaaatcttaaaagtctaga 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tcccagctgcttccgcctcacctgtctgatacatttcttctgaaatcttaaaagtctaga 743
Query: 543 aactacatataaatggtaactctcaa 568
||||||||||||||||||||||||||
Sbjct: 744 aactacatataaatggtaactctcaa 769
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 969
Length adjustment: 10
Effective length of query: 558
Effective length of database: 959
Effective search space: 535122
Effective search space used: 535122
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no523_g22.g1 MSMg01no523_g22.g1 CHROMAT_FILE:
MSMg01no523_g22.g1 PHD_FILE: MSMg01no523_g22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:20 2005
(589 letters)
>mm_chr6_113189434_113190422
Length = 989
Score = 973 bits (503), Expect = 0.0
Identities = 552/589 (93%), Gaps = 34/589 (5%)
Strand = Plus / Minus
Query: 1 tcaggttctgagggcatgagcttaagtggcccatgatccaaagaggcccctgggagtgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 tcaggttctgagggcatgagcttaagtggcccatgatccaaagaggcccctgggagtgag 749
Query: 61 tgacaagcaattctgtgatcatcattcaaggctgggaagaaacatgatgctggaccgtgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 tgacaagcaattctgtgatcatcattcaaggctgggaagaaacatgatgctggaccgtgg 689
Query: 121 gctctatattaactcacgtgtggcatgcttcaggtggtacctaagcccgttagcctcact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 gctctatattaactcacgtgtggcatgcttcaggtggtacctaagcccgttagcctcact 629
Query: 181 gcacagaagactgtggagtcacagggaggctgggcacatagtgagaccttgtcccaaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 gcacagaagactgtggagtcacagggaggctgggcacatagtgagaccttgtcccaaaaa 569
Query: 241 acaaagcaacagtaactgttgctttaggttactattatagcattaacacattatgttctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 acaaagcaacagtaactgttgctttaggttactattatagcattaacacattatgttctt 509
Query: 301 ttaacaccaaaaaatctttttttctgttctactgccccagaaattccagttgaagctcca 360
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 508 ttaacaccaaaaaatctttttttctgttctacagccccagaaactccagttgaagctcca 449
Query: 361 gtcagctgggcacgatggtgcacatctacaatcttattacatgggatgttgaggcaggag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gtcagctgggcacgatggtgcacatctacaatcttattacatgggatgttgaggcaggag 389
Query: 421 gatgccgagttcagtgtgtgtgtgcatgtgtgtgtgcatgtgtgtgtgtatatttatata 480
|||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 388 gatgccgagttcagtgtgtg----c--------gtgcatgtgtgtgtgtatatttatata 341
Query: 481 tgaattactatatatttatatatgaattactatatatctcaagaccatgtctcaacaaca 540
||||||||||||||| |||||||||||||||||||||||
Sbjct: 340 tgaattactatatat----------------------ctcaagaccatgtctcaacaaca 303
Query: 541 cctacaaaaataaagaagctctagtcagcagaatcagtaaaagctgcag 589
|||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 302 cctacaaaaataaagaagctctagtcagcaaaatcagtaaaagctgcag 254
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space: 566841
Effective search space used: 566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
