BAC Information

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BAC

Clone NameMSMg01-523J17
Chromosome6 (Build37)
Map Location 146,198,559 - 146,199,049
singlet/doubletsinglet
Overlap geneItpr2
Upstream geneKras, LOC100039495, LOC100042866, LOC546917, 1700073E17Rik, Ifltd1, LOC100042879, Tuba3b, Rassf8, Bhlhb3, Sspn
Downstream gene4933424B01Rik, Fgfr1op2, Tm7sf3, Surb7, EG626175, Stk38l, LOC621842, Arntl2, 1700023A16Rik, Ppfibp1, 1700034J05Rik, 2210417D09Rik, Mrps35, EG545893, Klhdc5, EG665288, LOC100039641
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-523J17.T7 (MSMg01no523_j17.b1)MSMg01-523J17.TJ (MSMg01no523_j17.g1)
ACCAG593884AG593885
length761757
length of high quality
(start - end)
499 (43 - 541)354 (74 - 427)
definitionCHROMAT_FILE: MSMg01no523_j17.b1 PHD_FILE: MSMg01no523_j17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:35 2005CHROMAT_FILE: MSMg01no523_j17.g1 PHD_FILE: MSMg01no523_j17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCCTTTTTCTGGGTCGTTAATACGACTCACTTTCCGAAGAGGATCCGCG
GAATTCTTGATTCTCTGAGCTAGCATGTAGCTGATCCCAGATCTGAGCCA
ATTATACAGGTCTCCCCAGAATCACCGTTTCTATGGTGTGCATGACTTCA
CAGCTCAGCTAGCTCTCACAGGATGGAGGGACTGGGTTGGACCGTTGTGT
GCTCATTTTCAATTCTCAAGACCTTCCTTTGAAGTTGAGCTATATAGAAT
TTTTTAATTTATAGACCCCCACAACTATTTCTCTTCTACCTGAAAATTTC
CAAATTTAATCCAAATTTATTAAAATTTAGTTTCTGTTTCCTTTGTCAGA
CATCTCCATTGATTGACAAGTACTCAAATATTGCCTTGCTCCTGGGTGTG
AAGTACAGTTTGTTCCTAGTAGTAGGGTGCGATGACATGTTTATCATTCA
TGTGTGTATCATTGTTCATGGTCTGTGGGATATGTGTAGTATGTATGTGT
AATGTGTATATGATGCGGTATAAGTGGTGTGTGTATGTGAAGTATGTCTA
CCAACACAACCCACATATTACATCTTTTTTACCTTTCTTTTTTCATATTC
TCCCTTTCTCACACTCTTTTCTCTCTTTTTTTAAATTTATTTTACCCCAC
TTTTTTATATATTTTCTTTCTATTTTTCTACTATTCTTTATTTTTCCTCC
TCCATTTTCCTCTCCCCCTTTTTCTTTCCTTTTATTCCCATTATCTTCCT
CCCTCTTCTTC
ATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGAACTCTTCAGCTGGGGAACGGTGGT
AATAAAGTGTTCCCGCAACACAGACTGTTGAGAAGGATTCAACTGCGTGA
ATTCAGAACTCTTCAGCTGGGGAACAGGGTACCCGTAAGTATAGCTTTAC
AAGGTAAGTCTGGTCTTGAACTTTCTAACGAAATTCAAGACAGTCTATCA
GAAGTAAAGTGGGAAATAGCTTTACAAGGTAAGTCTGGTCTTGAACTTTC
TAACGAAATTCAAGACAGTCTATCAGAAGTAAAGTGGGAAATAGCTTTAC
AAGGTACGCCTGGCCTTGAACTTTCTAACGAAATTCAAGACAGTCTATCA
CAAGTAAAGTGGGGAATAGCTTTACAAGGTACGCCTGGCCTTGAACTTTC
TAACGAAATTCAAGACAGTCTATCAGAAGTAAAGTGGGGAATAGCTTTAC
AAGGTACGCCTGGGCTTGAACTTTCTTACGAAATTCAAGACAGTCTATCA
GAAGTAAAGTGGGAAATAGCTTTACAAGGTATGTTTGGGCTTGAACTTTC
TCTAGTGTTAGGAGCCTTTTTGTTCCTTTTCACATGTTATCAAGAGGGTA
AAGCAGGGCTGAAAATTCTGGATGAAATTCACGGGCATCTTTCAGAAGTA
AAGCGGGGAGAGAGAGTTGGAACCAATAGGGAATATGGGTCACCTAATTA
GTTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no523_j17.b1 MSMg01no523_j17.b1 CHROMAT_FILE:
MSMg01no523_j17.b1 PHD_FILE: MSMg01no523_j17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:35 2005
         (499 letters)



>mm_chr6_146198351_146199250
          Length = 900

 Score =  824 bits (426), Expect = 0.0
 Identities = 475/492 (96%), Gaps = 3/492 (0%)
 Strand = Plus / Minus

                                                                       
Query: 9   gaattcttgattctctgagctagcatgtagctgatcccagatctgagccaattatacagg 68
           ||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 gaattcttgagactgtgagctagcatgtagctgatcccagatctgagccaattatacagg 640

                                                                       
Query: 69  tctccccagaatcaccgtttctatggtgtgcatgacttcacagctcagctagctctcaca 128
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 639 tctccccagaatcaccgtttctatggtgtgcatgacttcacagctcagctggctctcaca 580

                                                                       
Query: 129 ggatggagggactgggttggaccgttgtgtgctcattttcaattctcaagaccttccttt 188
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 579 ggatggagggactgggttggaccattgtgtgctcattttcaattctcaagaccttccttt 520

                                                                       
Query: 189 gaagttgagctatatagaattttttaatttatagacccccacaactatttctcttctacc 248
           |||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||
Sbjct: 519 gaagttgagctatatagaattttttattttataga-ccgcacaactatttctcttctacc 461

                                                                       
Query: 249 tgaaaatttccaaatttaatccaaatttattaaaatttagtttctgtttcctttgtcaga 308
           |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 460 tgaagatttccaaatttaatccaaatttatttaaatttagtttctgtttcctttgtcaga 401

                                                                       
Query: 309 catctccattgattgacaagtactcaaatattgccttgctcctgggtgtgaagtacagtt 368
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 400 catctccattgattgacaagtactcaaatgttgccttgctcctgggtgtgaagtacagtt 341

                                                                       
Query: 369 tgttcctagtagtagggtgcgatgacatgtttatcattcatgtgtgtatcattgttcatg 428
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tgttcctagtagtagggtgcaatgacatgtttatcattcatgtgtgtatcattgttcatg 281

                                                                       
Query: 429 gtctgtgggatatgtgtagtatgtatgtgtaatgtgtatatgatgcggtataagtggtgt 488
           |||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 280 gtctgtggtatatgtgtagtatgtatgtgtaatgtgtatatgatgtggtataggtggtgt 221

                       
Query: 489 gt--gtatgtga 498
           ||  ||||||||
Sbjct: 220 gtatgtatgtga 209


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 900
Length adjustment: 10
Effective length of query: 489
Effective length of database: 890
Effective search space:   435210
Effective search space used:   435210
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)