BAC Information

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BAC

Clone NameMSMg01-525L15
Chromosome6 (Build37)
Map Location 18,633,230 - 18,633,764
singlet/doubletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2
Downstream geneEG545829, Lsm8, Ankrd7, LOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-525L15.T7 (MSMg01no525_l15.b1)MSMg01-525L15.TJ (MSMg01no525_l15.g1)
ACCAG595492AG595493
length801748
length of high quality
(start - end)		212 (40 - 251)589 (69 - 657)
definitionCHROMAT_FILE: MSMg01no525_l15.b1 PHD_FILE: MSMg01no525_l15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:26 2005CHROMAT_FILE: MSMg01no525_l15.g1 PHD_FILE: MSMg01no525_l15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
GAGATATGCCTGCCTCTGTCTCCCAAATGCTAGGATTGTTTGTTTCTTCT
TCTTTTTGTTGTTGTTAGCCACCATGTGGGTGGGTACTGGGAATTGAACT
TGGGACCTCTGGAAAAGCAGGCAATGCTCTTAACCACTGAGCCATCTCTA
CTGCTCCCTGTTTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTC
TCTTATCTTATCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTC
TCTTATCTTCTCATCTTTTTTTTTCTCTTCTCTTCTCGTGTGTTCCTTTG
TCTTCTTTTCTATCCCCAGCCCCTCTCTTATTTCGTCTTGTTTGCCGTTT
CTATTCTATCCCTCCCCTCTTTTTTTTTTCTGGACCGTTTTGCCTCCCAT
TACTATCCTCCCTTTTATCTTGGACTTATGTGATTTAGGTGCCGGTAACC
CGCGTAATCATTATCTTTTCTTGATCCTTTGTACGGATTCTATTCCGTTT
CCACGTTTTGCTTGGTATCATTTTTTACCTTTACTACCTATTTCACTCCT
TCCCTCTCTTTTTTCCATTATGGGCGTATTATATTGGCTTTCTTGTCGCG
TTTATTATTTCCGTCGTTAATCCACCGACCAACATTTTTGGTTCTCCCCA
CTTATTTCATCTTTATTCCCTTTCTTGTTTCGCCGCCACTTTTCCGCCCC
TGGCCCGGGCTTTCCCCTTCTTTTCCCCCACTCTATGCCACTCTTTTCCT
C

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACAGTATCACTAGCCACTGCTCAGGAAAATTG
TATGTAATTAAGATGCAAGCCCAATTAAAGTATCAGTGCCTGTTGTTTGT
TTGTTTGGGTTTTTTTGGTTTTTTGAAACAGGGTTTCTCTGTGTAGCCCT
GGCTGTCCTGGAACTCACTCTGCGATTGGCAACCATGACATGTGCAGAGA
TCAGAGGACAACTTGTGAACTTTGGGAGTTGGTTCTCTTCATTGACCACG
TAAGATTCATGGATTGAATTTAACTCTGATACCATTAAGCTGTCTCACCA
GTCCACAAGCTAGTGACTTCTAAAACTTTGTACGTGATTTCAGTGTGAAG
GCAGAGTGGGAATCTCTATCTTAAACAGTTCTTCATTCTGCCGACGCACT
GTTGGTGGTGACATCAGTGCTTGCTAATGAAAGGAGCAGATGTTTTTGTT
CATCATTAACCTACCATTGTCAATAGGAGCAGTTCTTAGCTTGGGAGATG
TTGAGAACATTTGGGAATAGGCTTCAAAGCTGTTGGTACTATCATAGCTG
TGATGACCTGCCACAACTATCGATCCACTCTCCCTGACCTTTACAGCTTC
CATGCATGGTAAGACTGCCTAGAGAGAAGAACAGTGACCTGCCAGCAGAG
AAAGAGGAGCCATCAAGGTAGAATGCAACTACCTTTAGAACCATCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no525_l15.g1 MSMg01no525_l15.g1 CHROMAT_FILE:
MSMg01no525_l15.g1 PHD_FILE: MSMg01no525_l15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:26 2005
         (589 letters)



>mm_chr6_18632776_18633764
          Length = 989

 Score =  996 bits (515), Expect = 0.0
 Identities = 530/535 (99%)
 Strand = Plus / Minus

                                                                       
Query: 55  aattaaagtatcagtgcctgttgtttgtttgtttgggtttttttggttttttgaaacagg 114
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 989 aattaaagtaccagtgcctgttgtttgtttgtttgggtttttttggttttttgaaacagg 930

                                                                       
Query: 115 gtttctctgtgtagccctggctgtcctggaactcactctgcgattggcaaccatgacatg 174
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 929 gtttctctgtgtagccctggctgtcctggaactcactctgcgattggcaaccatgatatg 870

                                                                       
Query: 175 tgcagagatcagaggacaacttgtgaactttgggagttggttctcttcattgaccacgta 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 tgcagagatcagaggacaacttgtgaactttgggagttggttctcttcattgaccacgta 810

                                                                       
Query: 235 agattcatggattgaatttaactctgataccattaagctgtctcaccagtccacaagcta 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 agattcatggattgaatttaactctgataccattaagctgtctcaccagtccacaagcta 750

                                                                       
Query: 295 gtgacttctaaaactttgtacgtgatttcagtgtgaaggcagagtgggaatctctatctt 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 gtgacttctaaaactttgtacgtgatttcagtgtgaaggcagagtgggaatctctatctt 690

                                                                       
Query: 355 aaacagttcttcattctgccgacgcactgttggtggtgacatcagtgcttgctaatgaaa 414
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 689 aaacagttcttcattctgccgacgcactgttggtggtgacatcagttcttgctaatgaaa 630

                                                                       
Query: 415 ggagcagatgtttttgttcatcattaacctaccattgtcaataggagcagttcttagctt 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 ggagcagatgtttttgttcatcattaacctaccattgtcaataggagcagttcttagctt 570

                                                                       
Query: 475 gggagatgttgagaacatttgggaataggcttcaaagctgttggtactatcatagctgtg 534
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 569 gggagatgttgagaacatttgggaataggcttcaaagccgttggtactatcatagctgtg 510

                                                                  
Query: 535 atgacctgccacaactatcgatccactctccctgacctttacagcttccatgcat 589
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 509 atgacctgccacaaccatcgatccactctccctgacctttacagcttccatgcat 455


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space:   566841
Effective search space used:   566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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