Query= MSMg01no526_f20.b1 MSMg01no526_f20.b1 CHROMAT_FILE:
MSMg01no526_f20.b1 PHD_FILE: MSMg01no526_f20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:16 2005
(653 letters)
>mm_chr6_19857948_19859000
Length = 1053
Score = 1141 bits (590), Expect = 0.0
Identities = 636/652 (97%), Gaps = 4/652 (0%)
Strand = Plus / Plus
Query: 5 gaattcagtttggcagaactgagaatggtgggaaaatgtgaaagaaggaacaggaaaagt 64
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 203 gaattcagtttggcagaactgagaatggtgggaaactgtgaaagaaggaacaggaaaagt 262
Query: 65 gctttacttgatagttctagatgacagaacgaaaatatatagacatgttaatacagttat 124
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 263 gctttacttgatagttctagatgacagaacaaaaatatatagacatgtcaatacagttat 322
Query: 125 gttttataaaatgaagcaaaaataaacagctttgtagtatgtgaaagaatgctggaataa 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 attttataaaatgaagcaaaaataaacagctttgtagtatgtgaaagaatgctggaataa 382
Query: 185 gacctcatcatgaggctaaaaagcaaaaatttctcaaggagcaaagagacatggtatacc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gacctcatcatgaggctaaaaagcaaaaatttctcaaggagcaaagagacatggtatacc 442
Query: 245 tgtgagtaacagaaccatgatttgaacacgtgcaattattttgtttttgtgcagaggacc 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tgtgagtaacagaaccatgatttgaacacgtgcaattattttgtttttgtgcagaggaca 502
Query: 305 acagaacacagaaaatagacaggagagttcaca-taaactttctgtcacagaaagcttta 363
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 503 acagaacacagaaaatagacaggagagttc-caataaactttctgtcacagaaagcttta 561
Query: 364 tagtacaaagaaaaaacccaattcatataaatatcaaagaaggttaaaatctttccaata 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tagtacaaagaaaaaacccaattcatataaatatcaaagaaggttaaaatctttccaata 621
Query: 424 cactacaaaaaaagcaatttactttgttttgttgttgttgttgttgttgtt--tttgatt 481
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 622 tactacaaaaaaagcaatttactttgttttgttgttgttgttgttgttgttgttttgatt 681
Query: 482 aaccatattgtactaccaaagtattaatagccacaggcattgcttaaggcataaaactca 541
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 aaccatattgtgttaccaaagtattaatagccacaggcattgcttaaggcataaaactca 741
Query: 542 ttatttgttttcttcaggagagataatttgtatttattcctagaaggaataaaataaatc 601
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 742 ttatttgttttcttcaggagagataatttgtatttattcctagaaagaataaaataaatc 801
Query: 602 acaaaacttggagtttctgtcaagatgatgtaagcattacccttattttcca 653
||| |||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 802 acacaacttggagtttctttcaagatgatgtaagcactacccttattttcca 853
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space: 670649
Effective search space used: 670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no526_f20.g1 MSMg01no526_f20.g1 CHROMAT_FILE:
MSMg01no526_f20.g1 PHD_FILE: MSMg01no526_f20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:16 2005
(621 letters)
>mm_chr6_20025930_20026951
Length = 1022
Score = 1172 bits (606), Expect = 0.0
Identities = 618/622 (99%), Gaps = 1/622 (0%)
Strand = Plus / Minus
Query: 1 tttatcaagcttccctgctcaaaattatggtaaaagataccattacaagatcatcgttta 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 tttatcaagcttccctgcttaaaattatggtaaaagataccattacaagatcatcgttta 763
Query: 61 ttctcatttccaaatcacatccaaagaacccacactgaacattgtttagtttctaactat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 ttctcatttccaaatcacatccaaagaacccacactgaacattgtttagtttctaactat 703
Query: 121 gaggaacagcataattgagtattagacgggtattttttgaaagctcctagtgagatataa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 gaggaacagcataattgagtattagacgggtattttttgaaagctcctagtgagatataa 643
Query: 181 agtgaatttgaattgcttgaagtgcaggcacaattagatccatttaaactctgtcttaca 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 642 agtgaatttgaattgcttgaagtgcaggcacagttagatccatttaaactctgtcttaca 583
Query: 241 tcttcatgtcaaggtcatcctggtcaaaaatgaaaggatgaaattacattagaaatttga 300
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 582 tcttcatgtcaaggtcatcctggtcaaaaatgaagggatgaaattacattagaaatttga 523
Query: 301 gtcaattttttcatatttacaagtttagcatatgtgcttctttcgattagtatgaaactt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gtcaattttttcatatttacaagtttagcatatgtgcttctttcgattagtatgaaactt 463
Query: 361 gaaggtctt-aaaaaaaaaaagaaccatgcatttagtatgcaaccaaagttcataggaag 419
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 gaaggtcttaaaaaaaaaaaagaaccatgcatttagtatgcaaccaaagttcataggaag 403
Query: 420 taaggagaaaatccagaggattatggtgttttcattgctagttttgtgtgaacagtacct 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 taaggagaaaatccagaggattatggtgttttcattgctagttttgtgtgaacagtacct 343
Query: 480 cacagtcaggtttacagtcactgagttttctaacagcttttaatttacttcttttccact 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 cacagtcaggtttacagtcactgagttttctaacagcttttaatttacttcttttccact 283
Query: 540 ttggtagtctcagaagtaatataaagcatatttttcctaccatgaagagattagagtatc 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ttggtagtctcagaagtaatataaagcatatttttcctaccatgaagagattagagtatc 223
Query: 600 tttaagctcagttgaactcacc 621
||||||||||||||||||||||
Sbjct: 222 tttaagctcagttgaactcacc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1022
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1012
Effective search space: 618332
Effective search space used: 618332
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
