Query= MSMg01no526_o08.b1 MSMg01no526_o08.b1 CHROMAT_FILE:
MSMg01no526_o08.b1 PHD_FILE: MSMg01no526_o08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:57 2005
(615 letters)
>mm_chr6_76979990_76981005
Length = 1016
Score = 1160 bits (600), Expect = 0.0
Identities = 609/612 (99%), Gaps = 1/612 (0%)
Strand = Plus / Plus
Query: 5 gaattccagtgttccttttgggatagagcagaggtgaaagttacacttctgtttgctttt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagtgttccttttgggatagagcagaggtgaaagttacacttctgtttgctttt 264
Query: 65 gtcttgtcttgttttatgtcctcttgctcgattagaagatccttctaaaactactcaaat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtcttgtcttgttttatgtcctcttgctcgattagaagatccttctaaaactactcaaat 324
Query: 125 tccccttgtccactctaatgacagcaacaagtactttcatgagaactttctagatggaga 184
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 325 tccccttgtccactctaatgacagcaacaagtactttcatgagagctttctagatggaga 384
Query: 185 tacctcagttgctctcctgcttcatttaccctgcttaataaggtttcccttcatggagcc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tacctcagttgctctcctgcttcatttaccctgcttaataaggtttcccttcatggagcc 444
Query: 245 tttggagacttcccaaacccaatccaaatggttcatgttcctaaactggcagggaaccaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttggagacttcccaaacccaatccaaatggttcatgttcctaaactggcagggaaccaa 504
Query: 305 ggcagct-tgtcaccaggtgtttcactgtgtcacactgaattctataggaaccatctagg 363
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 505 ggcagctctgtcaccaggtgtttcactgtgtcacactgaattctataggaacaatctagg 564
Query: 364 gaatgggagaacaacgaaaaggtcggccattcttgtttctctttgctggtccaaagaata 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaatgggagaacaacgaaaaggtcggccattcttgtttctctttgctggtccaaagaata 624
Query: 424 tggctctatctttcagaaggcagagtggcaaggcatatctttgattgtacaaactcaagt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tggctctatctttcagaaggcagagtggcaaggcatatctttgattgtacaaactcaagt 684
Query: 484 tgtatgctttctgagatgatgaaagcattctcattactttgaacaatgggactgatgctg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgtatgctttctgagatgatgaaagcattctcattactttgaacaatgggactgatgctg 744
Query: 544 gctgctgcaatcaagtgtatggggatattgtaatcaggatgcaattgatcatgtataggc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gctgctgcaatcaagtgtatggggatattgtaatcaggatgcaattgatcatgtataggc 804
Query: 604 attactccaaat 615
||||||||||||
Sbjct: 805 attactccaaat 816
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1016
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1006
Effective search space: 608630
Effective search space used: 608630
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no526_o08.g1 MSMg01no526_o08.g1 CHROMAT_FILE:
MSMg01no526_o08.g1 PHD_FILE: MSMg01no526_o08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:58 2005
(527 letters)
>mm_chr6_77154831_77155757
Length = 927
Score = 936 bits (484), Expect = 0.0
Identities = 519/534 (97%), Gaps = 8/534 (1%)
Strand = Plus / Minus
Query: 1 atacagccagttctgaaagggttctaaatgcatgaccttctctccatacacatccataca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 atacagccagttctgaaagggttctaaatgcatgaccttctctccatacacatccataca 533
Query: 61 ctccatgcttccaaagcaccaatgcacttggaacaactttaaa-actcctgtatagattc 119
|||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||
Sbjct: 532 ctccatgcttccaaagcaccgatgcacttggaacaac-ttaaacactcctgtatagattc 474
Query: 120 attgatgtgggggttttgttgttgccatttgtttcatactggtggttttattacataggt 179
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 473 attgatgtgggggttttgttgttgccgtttgtttcatactggtggttttattacataggt 414
Query: 180 gagattgttcagacctttgaaaacttaacctacaaccagtcacacaagcactcttcccag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gagattgttcagacctttgaaaacttaacctacaaccagtcacacaagcactcttcccag 354
Query: 240 aggtctgcagcagagttgaagttcccagtttccaaatgggtattggtctcattagtgagt 299
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 aggtctgcaacagagttgaagttcccagtttccaaatgggtattggtctcattagtgagt 294
Query: 300 aagctctatcttaaagctgacaatgagtcatttcttgagcatgtgaaagacatttaaagc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 aagctctatcttaaagctgacaatgagtcatttcttgagcatgtgaaagacatttaaagc 234
Query: 360 caggctgaggtgcatgaaactgtgcctcaagcaaacaacaacaacaacaataacaa---- 415
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 233 caggctgaggcgcatgaaactgtgcctcaagcaaacaacaacaacaacaacaacaacaac 174
Query: 416 --agacgtaaaaatggccaatcaacacatggagatctgttcaacatcctcagtcatcatt 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 aaagacgtaaaaatggccaatcaacacatggagatctgttcaacatcctcagtcatcatt 114
Query: 474 tgcgtgccaatcaaagccacaaaatgctatgtcttacctgctaccatggctgta 527
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 113 tgcatgccaatcaaaaccacaaaatgctatgtcttacctgctaccatggctgta 60
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space: 474089
Effective search space used: 474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
