Query= MSMg01no527_j07.b1 MSMg01no527_j07.b1 CHROMAT_FILE:
MSMg01no527_j07.b1 PHD_FILE: MSMg01no527_j07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:52 2005
(611 letters)
>mm_chr6_37846098_37847108
Length = 1011
Score = 1162 bits (601), Expect = 0.0
Identities = 605/607 (99%), Gaps = 2/607 (0%)
Strand = Plus / Plus
Query: 5 gaattcattttgatgatgacgcaggctgtatgtttcagtttattttactttactgtgtgt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattttgatgatgacgcaggctgtatgtttcagtttattttactttactgtgtgt 264
Query: 65 aagtatttggcctttgcatgcatgtgtgcttgaactctgtgcacgctgctgggagccaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagtatttggcctttgcatgcatgtgtgcttgaactctgtgcacgctgctgggagccaaa 324
Query: 125 ccaggacctctggaagaagaacttttaaccactgtgcctgccatctctccaactctataa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccaggacctctggaagaagaacttttaaccactgtgcctgccatctctccaactctataa 384
Query: 185 ttctttgaaaacatgttttactgtttagcatgtattacatcttgatgactttacattcac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttctttgaaaacatgttttactgtttagcatgtattacatcttgatgactttacattcac 444
Query: 245 acttaaatttacattctgctagtgtggggtgacaataaatgtcattgtatcaagttattt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acttaaatttacattctgctagtgtggggtgacaataaatgtcattgtatcaagttattt 504
Query: 305 aacttaagtctttttttaattagatattttcttcatttacatttcaaatgctatatcctt 364
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aacttaagtcttttt--aattagatattttcttcatttacatttcaaatgctatatcctt 562
Query: 365 tcctagtttcctctccaaaagtcccttataccctccccacaccctgctccccaacccacc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tcctagtttcctctccaaaagtcccttataccctccccacaccctgctccccaacccacc 622
Query: 425 cactcccacttcctggccctggcatatatccccccccccccccccgtactggggcatata 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 cactcccacttcctggccctggcatatatccccccccccccccccgtactggggcatata 682
Query: 485 atagcaagaccaagggcctctcctcccattgatggcaaagtaggccatcctctgctacat 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 atagcaagaccaagggcctctcctcccattgatggcaaagtaggccatcctctgctacat 742
Query: 545 atgcagctagagacacaagctctggggatactggttagttcatattactattcctcctat 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 atgcagctagagacacaagctctggggatactggttagttcatattactattcctcctat 802
Query: 605 agggttg 611
|||||||
Sbjct: 803 agggttg 809
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space: 601601
Effective search space used: 601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no527_j07.g1 MSMg01no527_j07.g1 CHROMAT_FILE:
MSMg01no527_j07.g1 PHD_FILE: MSMg01no527_j07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:52 2005
(633 letters)
>mm_chr6_38020631_38021663
Length = 1033
Score = 770 bits (398), Expect = 0.0
Identities = 472/522 (90%), Gaps = 42/522 (8%)
Strand = Plus / Minus
Query: 1 agtattaagagcaaggaggagatcatgagtttgcattgccagcatcctggattgcttgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 agtattaagagcaaggaggagatcatgagtttgcattgccagcatcctggattgcttgtg 423
Query: 61 gccgacagagtcagcatggtgggtggagggtctgagaagacagttggatggaagcagggg 120
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 422 gctgacagagtcagcatggtgggtggagggtctgagaagacagttgaatggaagcagggg 363
Query: 121 cctaaaagctctctaaggccacaatctgttcctcccatgtaccttccacagctgtttgag 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 cctagaagctctctaaggccacaatctgttcctcccatgtaccttccacagctgtttgag 303
Query: 181 cagctagtcagactggaagtatatataacactgcagggttgtggatctagggagagagga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 cagctagtcagactggaagtatatataacactgcagggttgtggatctagggagagagga 243
Query: 241 tttcagagagacagaaacgacacagttacagccttgcttcctgttctacctctttctctt 300
||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||
Sbjct: 242 tttcagagagacagaaaagacacagttacagccttgcttcctatcctacctctttctctt 183
Query: 301 cctcttccttttcctcctccccctcttcttcctcttcctcctcctccttttcctcctctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 cctcttccttttcctcctccccctcttcttcctcttcctcctcctccttttcctcctctt 123
Query: 361 tctcttcttcctcttcctcctcctccttttcctcatcttcctcttcttcctcttcctcct 420
||||||||||||||||||| ||
Sbjct: 122 ---------cctcttcctcctcctcctt------------------------------ct 102
Query: 421 cctcttttcacgggagtgctataacattcctttccttcttcccctcccctcctcttccct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 101 cctcttttcacgggagtgctataacattcctttccttcttcccctcccctcctctcccct 42
Query: 481 cccctcccctc--ttctacttccccgtctttctgtttttgaa 520
||||||||||| |||||||||| |||||||||||||||||
Sbjct: 41 cccctcccctcccttctacttcct-gtctttctgtttttgaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space: 637329
Effective search space used: 637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
