Query= MSMg01no527_o18.b1 MSMg01no527_o18.b1 CHROMAT_FILE:
MSMg01no527_o18.b1 PHD_FILE: MSMg01no527_o18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:22 2005
(638 letters)
>mm_chr6_116997871_116998910
Length = 1040
Score = 1046 bits (541), Expect = 0.0
Identities = 616/643 (95%), Gaps = 8/643 (1%)
Strand = Plus / Plus
Query: 1 tttaccccaaaggtctcatcaccttgcagtggaccctgtctcttaaaggttctaccaaca 60
||||||||||| ||||||||||||| |||||||||||| |||||||| ||||||||||||
Sbjct: 201 tttaccccaaaagtctcatcacctttcagtggaccctgcctcttaaaagttctaccaaca 260
Query: 61 ccaaggatcaaactttcagcatctgaacttttagggaacaaattacatcaaaaggatgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaaggatcaaactttcagcatctgaacttttagggaacaaattacatcaaaaggatgat 320
Query: 121 ggcaggcagggtctctcctgacttctgtttgttttttgtttgttttcttgtcctgtatgg 180
|||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 321 ggcaggtggggtctctcctgacttctgtttgttttttgtttgttttcttgacctgcatgg 380
Query: 181 ctttgatttgtgttcatttccatatgagcatcttgtttttgtaaaatactaaccctaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttgatttgtgttcatttccatatgagcatcttgtttttgtaaaatactaaccctaaaa 440
Query: 241 gaatcacaggagtgccc-atatttccatcaatctgaaaatagctaaatcagctctgtgaa 299
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaatcacaggagtgccccatatttccatcaatctgaaaatagctaaatcagctctgtgaa 500
Query: 300 aaatccaaatcaaaaactagaggagaacaatacgaactgattgaagaagatggctaagat 359
|| ||||||| ||||||||||||||| ||| | ||||||||||||||||| ||| |||||
Sbjct: 501 aa-tccaaataaaaaactagaggagagcaacatgaactgattgaagaagacggccaagat 559
Query: 360 agtccttgataaggaaagtcaaagagataataaacctcgggagggtcgcatttgtgatca 419
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 560 agtccttgataaggaaagtcaatgagataataaacctcgggagggtcgcatttgtggtca 619
Query: 420 tgcacaaatactcacttgacaagagattttagaaggaagcaggtgatactagtccaagga 479
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 620 tgcacaaatactcatttgacaagagattttagaaggaagcaggtgatactagtcaaag-a 678
Query: 480 agattttttttaattttacctgttacacaagctgttcataaaactacttttcttcttgtg 539
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 agattttttt-aattttacctgttacacaagctgttcataaaactacttttcttcttgtg 737
Query: 540 caaaatgagcaccatccactccatggttgcaaaggacaagttgggctgacc----ccccc 595
||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 738 caaaatgagcaccatccactccatggttgcaaaagacaagttgggctgaccacccccccc 797
Query: 596 cccggccttgcacaggggtatacttggggaccacaacattgct 638
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 cccggccttgcacaggggtatacttggggaccacaacattgct 840
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1040
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1030
Effective search space: 646840
Effective search space used: 646840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no527_o18.g1 MSMg01no527_o18.g1 CHROMAT_FILE:
MSMg01no527_o18.g1 PHD_FILE: MSMg01no527_o18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:22 2005
(623 letters)
>mm_chr6_117169495_117170520
Length = 1026
Score = 1176 bits (608), Expect = 0.0
Identities = 619/624 (99%), Gaps = 3/624 (0%)
Strand = Plus / Minus
Query: 1 ccagtaaagaatgcaaagaaacagaaagatctgcttatgtgcagtggacccttgaactgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 ccagtaaagaatgcaaagaaacagaaagatctgcttatgtgcagtggacccttgaactgg 765
Query: 61 gttttttaatgttctttgctgaattggaacagcagccagctaggagtggccggaaagaga 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 tttttttaatgttctttgctgaattggaacagcagccagctaggagtggccggaaagaga 705
Query: 121 atggcatctgtagggctccacatgggggcatggagctgggcaagggagtgttctgcttag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 atggcatctgtagggctccacatgggggcatggagctgggcaagggagtgttctgcttag 645
Query: 181 agccaaggaccctacaggggtgacagaaggtgacagggaaggaagaagggaggatgctgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 agccaaggaccctacaggggtgacagaaggtgacagggaaggaagaagggaggatgctgc 585
Query: 241 gcgtgcacagcccccactgctctccagccgcgcccttactctgactctttgtgattcaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 gcgtgcacagcccccactgctctccagccgcgcccttactctgactctttgtgattcaca 525
Query: 301 cagtttgagacatgcaaggcagatcttcaatccgtttcttaagtgacccagagtgcctaa 360
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 524 cagtttgagacatgcaaggcagatcttcaatccatttcttaagtgacccagagtgcctaa 465
Query: 361 aaatgggattttacaatatcataaacttaatgcctgaatcccaattctaaactccaagct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 aaatgggattttacaatatcataaacttaatgcctgaatcccaattctaaactccaagct 405
Query: 421 gtgtttttctctatctcacagaaggacaaagaaggaaaaggccagagagcaggccatgac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gtgtttttctctatctcacagaaggacaaagaaggaaaaggccagagagcaggccatgac 345
Query: 481 tccattcttggatccttgtgcctactaggtgcacaacaaagaccttgattgtgttctaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 tccattcttggatccttgtgcctactaggtgcacaacaaagaccttgattgtgttctaag 285
Query: 541 ggtcttgtacctactttgtgcacaacaacttttgaatgaatacatgatggat---aacaa 597
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 284 ggtcttgtacctactttgtgcacaacaacttttgaatgaatacatgatggataacaacaa 225
Query: 598 gagattttttaaaagtagcaagtg 621
||||||||||||||||||||||||
Sbjct: 224 gagattttttaaaagtagcaagtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1026
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1016
Effective search space: 622808
Effective search space used: 622808
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
