Query= MSMg01no528_f23.b1 MSMg01no528_f23.b1 CHROMAT_FILE:
MSMg01no528_f23.b1 PHD_FILE: MSMg01no528_f23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:57 2005
(661 letters)
>mm_chr6_105833913_105834973
Length = 1061
Score = 1214 bits (628), Expect = 0.0
Identities = 656/672 (97%), Gaps = 14/672 (2%)
Strand = Plus / Minus
Query: 4 ggaattctc-tttttgtatacctactcttgcaaaatcctctcaccatattgttattgtag 62
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 951 ggaattctcttttttgtgtacctactcttgcaaaatcctctcaccatattgttattgtag 892
Query: 63 tcttgatcagtctgttttgtagattcttaaaggataggtttttatttctggtcaaaggaa 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891 tcttgatcagtctgttttgtagattcttaaaggataggtttttatttctggtcaaaggaa 832
Query: 123 tggaatctaactctgcccttgtatggactcctaatattccaacctttaaaaaaaaaaa-- 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 tggaatctaactctgcccttgtatggactcctaatattccaacctttaaaaaaaaaaaga 772
Query: 181 ---aaaag-----aaaagaaaag---aaaaaaaaagagttcacccagttagacctataaa 229
||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 771 aagaaaagaaaaaaaaagaaaagaaaaaaaaaaaagagttcacccagttagacctataaa 712
Query: 230 tcatctgataggtgctggcgagtgcctaagtttggtttctccagtactttggctatgtga 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 tcatctgataggtgctggcgagtgcctaagtttggtttctccagtactttggctatgtga 652
Query: 290 ttgttcactagacctccaagcctaaatcaaaagggcaagttttctttccctcttcttaaa 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 ttgttcactagacctccaagcctaaatcaaaagggcaagttttctttccctcttcttaaa 592
Query: 350 ttctttcttctaggcagctgatgagattgacagcttgccttccctgtagcttttatttcg 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 ttctttcttctaggcagctgatgagattgacagcttgccttccctgtagcttttatttcg 532
Query: 410 aatgctaataaaattggccttgagcttcttttagagtctattcagaaactgtttttatca 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 aatgctaataaaattggccttgagcttcttttagagtctattcagaaactgtttttatca 472
Query: 470 tcaggacttagaagctaaagctgggatgccaacttccctggtaacctatggtgcccaaga 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tcaggacttagaagctaaagctgggatgccaacttccctggtaacctatggtgcccaaga 412
Query: 530 agggcaataacaataacaacaacaacaacaataataattataataatgtttatcctctac 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 agggcaataacaataacaacaacaacaacaataataattataataatgtttatcctctac 352
Query: 590 catgtggtactgcataaagaaggtcatcacccaatatagccctctcattcccaaaattcc 649
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 351 catgtggtactgcataaagaaggtcatcacccaatatagccctttcattcccaaaattcc 292
Query: 650 taggttttgaga 661
||||||||||||
Sbjct: 291 taggttttgaga 280
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space: 684201
Effective search space used: 684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no528_f23.g1 MSMg01no528_f23.g1 CHROMAT_FILE:
MSMg01no528_f23.g1 PHD_FILE: MSMg01no528_f23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:57 2005
(613 letters)
>mm_chr6_105720331_105721343
Length = 1013
Score = 866 bits (448), Expect = 0.0
Identities = 548/622 (88%), Gaps = 69/622 (11%)
Strand = Plus / Plus
Query: 1 tcaattaaggtagctaagattgtgcacacagaactttattgagactccatcagtctgttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaattaaggtagctaagattgtgcacacagaactttattgagactccatcagtctgttt 260
Query: 61 tcaaagcatatcttaaagctagaaagagttagaacttgtcattcattatggctgcagttt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 tcaaagcatatcttaaagctagaaagagttagaacttgtcattcattatggctgaagttt 320
Query: 121 ggaagtattagataagtttgccagccatgaattctggagagagagagagagagagagaga 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 ggaagtattagataagtttgccagccatgaattctggagagagggagagagagagagaga 380
Query: 181 gagagagagagagagag--agagagagagagagagagagagagagagagagagagagaga 238
||||||||||||||||| ||||||| ||||| |||||||
Sbjct: 381 gagagagagagagagagtcagagagacagagacagagaga-------------------- 420
Query: 239 gagtcagagagacagagacagagagacagacagagacagagacagagacagagagaagag 298
|||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 421 ----cagagagacagaga--------------gagacagagacagagacagagagaagag 462
Query: 299 agagagagacagagagacagagacagagagagacagagacagagagagacagagacagag 358
||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct: 463 agagagaga------------gacagagaga--cagagacagagagagacagagacagag 508
Query: 359 agagacagagacagagagagacagagagagacagagagagagacagagagagaga--aag 416
||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 509 agagacagagacagagagaga--------gacagagagagagacagagagagagagaaag 560
Query: 417 agagagaacatt-----tatatttatattggtaaagagctctgttcatgtggagtccaga 471
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 561 agagagaacattatatttatatttatattggtaaagagctctgttcatgtggagttcaga 620
Query: 472 aggcacccacaggtgtcgttggcctggcactagtatcatctgccttttctttgttttagt 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aggcacccacaggtgtcgttggcctggcactagtatcatctgccttttctttgttttagt 680
Query: 532 taaatgaagtccataagcgacctggagctccctaaggcagtcaggtatgaaaattgttct 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taaatgaagtccataagcgacctggagctccctaaggcagtcaggtatgaaaattgttct 740
Query: 592 ctggaatcacaagcatttatca 613
||||||||||||||||||||||
Sbjct: 741 ctggaatcacaagcatttatca 762
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 289
Number of extensions: 39
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space: 604809
Effective search space used: 604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
