BAC Information

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BAC

Clone NameMSMg01-528L04
Chromosome6 (Build37)
Map Location 114,244,024 - 114,429,527
singlet/doubletdoublet
Overlap geneSlc6a1, Hrh1
Upstream geneCpne9, Brpf1, Ogg1, Camk1, Tada3l, Arpc4, Ttll3, Rpusd3, Cidec, Jagn1, Il17re, Il17rc, Creld1, Prrt3, Tmem111, Fancd2, 4931417G12Rik, 6720456B07Rik, Vhlh, Irak2, Tatdn2, Ghrl, Sec13, Atp2b2, Slc6a11, LOC666491
Downstream geneAtg7, Vgll4, 1500001M20Rik, LOC100043420, Syn2, Timp4, Pparg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-528L04.T7 (MSMg01no528_l04.b1)MSMg01-528L04.TJ (MSMg01no528_l04.g1)
ACCAG597753AG597754
length751750
length of high quality
(start - end)		657 (49 - 705)590 (78 - 667)
definitionCHROMAT_FILE: MSMg01no528_l04.b1 PHD_FILE: MSMg01no528_l04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:22 2005CHROMAT_FILE: MSMg01no528_l04.g1 PHD_FILE: MSMg01no528_l04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,244,024 - 114,244,676)(114,428,939 - 114,429,527)
sequence
NAACTAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGATCATTCCCCCCAAGTGACCTTCGGCTCCTCCAACCTCAG
GTTGCTTCTGGTGAGTGTGTGCTCCCCAACTTCCCTGGGCACTCCAGGGT
CTGTAGGACAGGAGACCTTTCTGCCCCCCTTTCCTCCCTGTTCTCTCCCT
CCCTTTGTTTTCCTCCTCCTTGGTATCTTCTCCCCAGCCTCTGCCTCCTC
TGGGTTTTCCTTCTCACCCTCCCCACCCCTTCCTCCTTCACATCCACCCA
CTATGCCTAGGATGCTGAAGCTAGGGTGGATGGAGAGACCAAGAGGCATC
CTGAGCTGGCACTCTTGGGGGCTACAGAGCATGCTCAGAGCCAGTGAGGG
GGTGGTCAGGGGCTTTCTTTAGAGGAAGTGTCAGAGAGGTTCAGCGTGAG
GTCAGTGGGATCCTGGCTGCCTAAGAAACCACATCTGAAACACTGTCCGT
GGAGCTGGTGGCAGAGCCCTGCAGCCATGCCACCTCTTGTGGGTCCCTCC
AACTGACTCCAGTAGGCTGGCATGGAGTGTTTATACCAGGGACAACAGCA
GATGCCACCCATCCAACCCTTTGCTTTGTTTCCTGAAAGTCCTTTGTTAA
ATACTCACTAGCATCACACTGCTTTGGAGACATATGCTGTCCTTGCACCT
TAAAGATGGTACTTCAAAGGACATGCTTGCATCCAGTGCTACTGTAGGGG
G

NCCTCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTGGCATTATTTTTTATATCAGA
GATACCACTATGGACAAACCAGAGAAAAAAACTCTGATCTTGTGGAGTTT
AGATACCAGAGTTTAACCAGATCAGGGTGATCAGCACCTTGTACAAGTCT
TATTTCAAACATGTCCTGAACACCCTGAGCAGTCTCATCATCTGGGTCCT
CTTTGATGGCCCTGGGCCAAAAATGTGGCCAGAAAGAGGCTGTGGGGCTC
AAAAGCATTCTCCCTCGGTGACAAAGATGCCAAGCTATGAAAATCACCCT
TTCCCTCTACCCTACTCCTGAAAGGAAGTGAGAAAGGGGTGTTTGGGGTA
TGATGCTAGTTTGGAGGTAGTTAGGAATATCAAGAAACCCCCAGAGACTA
CAGTTTAAGGTTCTGTGGTCATGCAGCTGCTGAAGTAATTCTGCAATCTT
GCTCGTATCATAGCTAAATGCGTTCTTTGCTTAAGCCACTGCCCAAGAAT
TGTTGTTGGAAGCAGGGCAGCTGCTGGAAGGGAGCAGTTGGGAAGGAGCT
GATGGGGTGGAGCTGTTGTGAAGTCCTTGGAAAGAAAGCCCTGTGCCCAG
CCCCGCACAGTGAGGCCAGAGGAATGCCTGCAGTTCCATGGAAGTGGAAA
AGCCTTGGGGAACTCTGTGAGCCGGCTGTGAGCCCAGAAAGAAATGGCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no528_l04.b1 MSMg01no528_l04.b1 CHROMAT_FILE:
MSMg01no528_l04.b1 PHD_FILE: MSMg01no528_l04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:22 2005
         (657 letters)



>mm_chr6_114243820_114244876
          Length = 1057

 Score = 1216 bits (629), Expect = 0.0
 Identities = 647/653 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagatcattccccccaagtgaccttcggctcctccaacctcaggttgcttctggt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagatcattccccccaagtgaccttcggctcctccaacctcaggttgcttctggt 264

                                                                       
Query: 65  gagtgtgtgctccccaacttccctgggcactccagggtctgtaggacaggagacctttct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gagtgtgtgctccccaacttccctgggcactccagggtctgtaggacaggagacctttct 324

                                                                       
Query: 125 gcccccctttcctccctgttctctccctccctttgttttcctcctccttggtatcttctc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcccccctttcctccctgttctctccctccctttgttttcctcctccttggtatcttctc 384

                                                                       
Query: 185 cccagcctctgcctcctctgggttttccttctcaccctccccaccccttcctccttcaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cccagcctctgcctcctctgggttttccttctcaccctccccaccccttcctccttcaca 444

                                                                       
Query: 245 tccacccactatgcctaggatgctgaagctagggtggatggagagaccaagaggcatcct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tccacccactatgcctaggatgctgaagctagggtggatggagagaccaagaggcatcct 504

                                                                       
Query: 305 gagctggcactcttgggggctacagagcatgctcagagccagtgagggggtggtcagggg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gagctggcactcttgggggctacagagcatgctcagagccagtgagggggtggtcagggg 564

                                                                       
Query: 365 ctttctttagaggaagtgtcagagaggttcagcgtgaggtcagtgggatcctggctgcct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctttctttagaggaagtgtcagagaggttcagcgtgaggtcagtgggatcctggctgcct 624

                                                                       
Query: 425 aagaaaccacatctgaaacactgtccgtggagctggtggcagagccctgcagccatgcca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aagaaaccacatctgaaacactgtccgtggagctggtggcagagccctgcagccatgcca 684

                                                                       
Query: 485 cctcttgtgggtccctccaactgactccagtaggctggcatggagtgtttataccaggga 544
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 685 cctcttgtgggtccctccaactgactccagtaggctggcatggagtgtttataccatgga 744

                                                                       
Query: 545 caacagcagatgccacccatccaaccctttgctttgtttcctgaaagtcctttgttaaat 604
           ||||||||||||||||||||||| || ||||||||||||||||| ||||| |||||||||
Sbjct: 745 caacagcagatgccacccatccagccttttgctttgtttcctgagagtcccttgttaaat 804

                                                                
Query: 605 actcactagcatcacactgctttggagacatatgctgtccttgcaccttaaag 657
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 805 actcactagcatcacactgctttggagacatatgctgtccttggaccttaaag 857


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no528_l04.g1 MSMg01no528_l04.g1 CHROMAT_FILE:
MSMg01no528_l04.g1 PHD_FILE: MSMg01no528_l04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:22 2005
         (590 letters)



>mm_chr6_114428739_114429727
          Length = 989

 Score = 1048 bits (542), Expect = 0.0
 Identities = 578/590 (97%), Gaps = 1/590 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctggcattattttttatatcagagataccactatggacaaaccagagaaaaaaactctga 60
           ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 789 ctggcattattttttatatcagagataccaccatggacaaaccagag-aaaaaactctga 731

                                                                       
Query: 61  tcttgtggagtttagataccagagtttaaccagatcagggtgatcagcaccttgtacaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 tcttgtggagtttagataccagagtttaaccagatcagggtgatcagcaccttgtacaag 671

                                                                       
Query: 121 tcttatttcaaacatgtcctgaacaccctgagcagtctcatcatctgggtcctctttgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 tcttatttcaaacatgtcctgaacaccctgagcagtctcatcatctgggtcctctttgat 611

                                                                       
Query: 181 ggccctgggccaaaaatgtggccagaaagaggctgtggggctcaaaagcattctccctcg 240
            |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| 
Sbjct: 610 tgccctgggccaaaaatgtggccagaaagaggctgtggggctcaaaagcatgctccctct 551

                                                                       
Query: 241 gtgacaaagatgccaagctatgaaaatcaccctttccctctaccctactcctgaaaggaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 gtgacaaagatgccaagctatgaaaatcaccctttccctctaccctactcctgaaaggaa 491

                                                                       
Query: 301 gtgagaaaggggtgtttggggtatgatgctagtttggaggtagttaggaatatcaagaaa 360
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gtgaggaaggggtgtttggggtatgatgctagtttggaggtagttaggaatatcaagaaa 431

                                                                       
Query: 361 cccccagagactacagtttaaggttctgtggtcatgcagctgctgaagtaattctgcaat 420
            |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 430 accccagagactacagtttaaggttatgtggtcatgcagctgctgaagtaattctgcaat 371

                                                                       
Query: 421 cttgctcgtatcatagctaaatgcgttctttgcttaagccactgcccaagaattgttgtt 480
           ||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 370 cttgctcatatcatagctaaatgtgctctttgcttaagccactgcccaagaattgttgtt 311

                                                                       
Query: 481 ggaagcagggcagctgctggaagggagcagttgggaaggagctgatggggtggagctgtt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ggaagcagggcagctgctggaagggagcagttgggaaggagctgatggggtggagctgtt 251

                                                             
Query: 541 gtgaagtccttggaaagaaagccctgtgcccagccccgcacagtgaggcc 590
           | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gcgaagtccttggaaagaaagccctgtgcccagccccgcacagtgaggcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 989
Length adjustment: 10
Effective length of query: 580
Effective length of database: 979
Effective search space:   567820
Effective search space used:   567820
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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