BAC Information

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BAC

Clone NameMSMg01-530D07
Chromosome6 (Build37)
Map Location 66,494,515 - 66,495,146
singlet/doubletsinglet
Overlap genenone
Upstream gene9030611K07Rik, A930038C07Rik, LOC667160, Prdm5, 4930544G11Rik, Ppia-ps6_651.1, LOC100041916, Tpm3-rs3, LOC627751, Mad2l1
Downstream geneV1rc15, LOC100041941, Aurkb-ps, V1rc14, LOC546901, V1rc12, LOC627833, V1rc11, V1rc10, LOC100042816, LOC546902, V1rc13, EG546903, LOC100042008, 4930597O21Rik, Gng12, LOC100042837, Gadd45a, E230016M11Rik, EG667310, LOC667318, Serbp1, Il12rb2, LOC667324, EG667326, LOC672137, EG209589, LOC100042890, Il23r, Tacstd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-530D07.T7 (MSMg01no530_d07.b1)MSMg01-530D07.TJ (MSMg01no530_d07.g1)
ACCAG598899AG598900
length777776
length of high quality
(start - end)		652 (49 - 700)630 (76 - 705)
definitionCHROMAT_FILE: MSMg01no530_d07.b1 PHD_FILE: MSMg01no530_d07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:06:26 2005CHROMAT_FILE: MSMg01no530_d07.g1 PHD_FILE: MSMg01no530_d07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:06:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTGGTTTATTTCTATACCCCATTTTTGATTGGGTTGTTTGGT
TGTTTTTGATGGTTAGCTTCTTGGTTTCTTTATATATTTTGGATATTAGC
CCTCTATAGAATGTGGAGTTAGTGAAGATTTTTTTTCCCAATTTGTAAGT
TGTCGATTTGTCTTTTTGATTATGTCCTTTTTCTAACAGAAGCTTTGTTC
TTTAGAAAATTACATCAGAGAAGAAATGTTACAGAAAGTGGGAGTTATAG
AGGGATATAAATATTAAGTTGAAATCAGTGTTTCATTGAATATGACATTA
TAAGTTAAAAGCAACAATTTTTTCATGGCCTTGCCTTACTGTAGTGCACA
CCTGCATCTTTATCCTTGGACCAAAAATGTTTTTCTTTATTTTTTTTTAG
TTCCATTTTAAGATCTTGGATGGTTTTGTTCGTTTCCTTCACCTGTTTGG
TTGTGTTTTCCTGTAATTTTTGAAGGGATTTTTGTGTTTCTTCTTTAAGA
GCTTGTATTTATTTACTTGTGTTCTCCTTTGTGTCTTTAAGGAAGTTATT
TATGTCCTTCTTGGAGTCCTCTTTCATTGTCATGAGAAGTGATTTTAGAT
CTGAGTCTTGCTATTCTGGTGTGATGGTGTATACGGTCTTGCTATGGTAG
GAGGAATGGGTTCTCATGATGCCATATAACCTTGGTTTTTGTTGCTTATG
TTCGTATGCTGCCTCCCTGCATGTGAN

NCCATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCTTTTGAATGAGCAATTTCTACCC
TGTGTGGGTTTAAGTCATGCTTTATCTGTTTGTCAATCTGGATGTTTGGT
ATGTTTTCATGTTTCAGCTAGTGTGAATATTGCAGTCATGACTGCATAAC
ATATATTTAAGTCCATGCTTTTAATTATTTGGGGGGGATATAACCAAATA
CACTGCAGGATTGTATAAAAATGCTGTTTTTCAATTTTTTGAGGAACCAA
CATTCTATTTTCTACAATGGCTGTTGAGGACAGTCATATCTCACAACATA
GCCAATTTATATGTAAATTCTAGTTTCTTTTTATCTGTTCAATACATTAC
TGCTGGTAAAGATTTTAAGGCCTCTCACTGGTATTATTCTTCAAAGCCCT
TCTAGTTTTCAGTTGTAGCACACGTCCTAATGGTCAGTAAATGTTTATGG
TTCCTATGTCTCCTTTCTGTACTGACCCTGTAAAATATACCCTTTGTGTT
TTGTCTTTCTGATTGAAAGTCTTTTGCCTTTGGTTGATTCAACCATCTTT
GCTCTCTACCTGAAATGTTTTCATCCTTGCCGGTTTTTGCCTGTGTATTT
TCATTCAAAAGTTCAGCTGGTGTGGTATTTCTTTACCCCGACATGACATT
GGAGAGAAATTCAGCATTAGCTATTACATAAACTGNTATTAGTAAGGAGG
GTGGCATCAGAGTACTTTCTTTTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no530_d07.g1 MSMg01no530_d07.g1 CHROMAT_FILE:
MSMg01no530_d07.g1 PHD_FILE: MSMg01no530_d07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:26 2005
         (630 letters)



>mm_chr6_66494317_66495346
          Length = 1030

 Score = 1172 bits (606), Expect = 0.0
 Identities = 625/632 (98%), Gaps = 2/632 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccttttgaatgagcaatttctaccctgtgtgggtttaagtcatgctttatctgtttgtca 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ccttttgaatgagcaatttttaccctgtgtgggtttaagtcatgctttatctgtttgtca 258

                                                                       
Query: 61  atctggatgtttggtatgttttcatgtttcagctagtgtgaatattgcagtcatgactgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 atctggatgtttggtatgttttcatgtttcagctagtgtgaatattgcagtcatgactgc 318

                                                                       
Query: 121 ataacatatatttaagtccatgcttttaattatttggggggg--atataaccaaatacac 178
           ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 319 ataacatatatttaagtccatgcttttaattatttgggggggggatataaccaaatacac 378

                                                                       
Query: 179 tgcaggattgtataaaaatgctgtttttcaattttttgaggaaccaacattctattttct 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tgcaggattgtataaaaatgctgtttttcaattttttgaggaaccaacattctattttct 438

                                                                       
Query: 239 acaatggctgttgaggacagtcatatctcacaacatagccaatttatatgtaaattctag 298
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 439 acaatggctgttgaggacagtcatgtctcacaacatagccaatttatatgtaaattctag 498

                                                                       
Query: 299 tttctttttatctgttcaatacattactgctggtaaagattttaaggcctctcactggta 358
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 499 tttctttttatctgttcaatacattactgctggtaaagattttaaagcctctcactggta 558

                                                                       
Query: 359 ttattcttcaaagcccttctagttttcagttgtagcacacgtcctaatggtcagtaaatg 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttattcttcaaagcccttctagttttcagttgtagcacacgtcctaatggtcagtaaatg 618

                                                                       
Query: 419 tttatggttcctatgtctcctttctgtactgaccctgtaaaatataccctttgtgttttg 478
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 619 tttatggttcctatgtctcctttatgtactgaccctgtaaaatataccctttgtgttttg 678

                                                                       
Query: 479 tctttctgattgaaagtcttttgcctttggttgattcaaccatctttgctctctacctga 538
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tctttctaattgaaagtcttttgcctttggttgattcaaccatctttgctctctacctga 738

                                                                       
Query: 539 aatgttttcatccttgccggtttttgcctgtgtattttcattcaaaagttcagctggtgt 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 aatgttttcatccttgccggtttttgcctgtgtattttcattcaaaagttcagctggtgt 798

                                           
Query: 599 ggtatttctttaccccgacatgacattggaga 630
           ||||||||||||||||||||||||||||||||
Sbjct: 799 ggtatttctttaccccgacatgacattggaga 830


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space:   632400
Effective search space used:   632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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