NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCCATTTTGTAAATGAACTTCAGTCTGTCTCAGCCATAAAC
AGTAAACCATTCATTATGTCTGGTATGATTTTTTTTCCACTGGTAAAGGT
GACTTTGTGCTGTTTTCTTATAATATTCTTTCCCAATGGATGAGCTAGCT
TCTATATGGATGTAGAGGCGTGGATGCTGATAATTCCACTGAGCTAAGAA
AAAATTATGAGTGCAATTTTAGATATTAATATGTAGAATATTCTGGCAAA
AGGAAAGACTGACTAAACAAGAAAAATAAAGGGTAGACTTTCTGAGCTTC
AGACAATTAGAGAATCAGTTACCATAAAAAAAATGACAGAAGAATAAAAA
GCATTGGAATGAGCAAAATAGCTGAGCCTTTAGGTGCAGCTGCATTGGAG
GCTGCTGGCACAGGGAAACTGAAGGCTAAATAAGTAGAAGCTGGTACCTT
GTGTGGCTGAGAAGCACCATCTCTCCATGTCTTTTGCTTACTCTGGACAA
AAACTAGAAAGCTGCTAGTTATTTATGAAGTCTTGTCTACTTTGGACTTG
TGGTTACTGATGTCACTGCTAAGTTCCCAGGATTATCATGAGCAATGTCT
GTAGCTTTTTACAAACTAACTGCCTGTGTGGTTGATTGTAGGTAGTGTCA
GTTTCAGGGTGGGTTGTTTCANGCTGTGGGTTAGTATTTTACTATTATAT
ATGTAGTC

CCCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGAACAGCCAGGGATAAGGAGTAAG
ATACTGGGAGTAAAAGGAAAGAAGGGAGAAAGGAAGGGAGAGAGGGAGGG
ATGGAGGAAGGGAGGGAAGGAAAGAGAGAGGAAGGTATGAATGACGGAGA
ATGAATATAGGGTGGGACGATTGCGGCATGTCCACCTTCTTATGAGTATC
ACCCTCCGATTGGGTACCAACGTCTACCTCTACCTTTGCTCTTCCTACTA
TTTACTGGTCCTTACACTTTTCTTTTTCCTCTTGATCCTCTCTCTTCTCC
TTGTACTCCTTTTTTTCTCTTTTTTCTTTTCTTGGTCATTCCTTTCTCTC
TCTANNNTCTCCTTTCTCTCTCTCCTTCTTGTTGATGTTTTTCTCCTGCT
CTTTTTTTTTCCTCTTTTTCTCTCTTTCTTCTTTCTTTGTTCTTTTTCCC
TTTTTTTTTTCTCCTTTGCTCTTCTTTTTTTTTTTTCTCTTTTCTTCCTT
TTCTCTCTTCTTTTTCNCCTGTTTCCTTTTTTTTTTCTCCTCCTCTTTGG
CCTTCTTCCCCTCCTTTCCTCTCTCTTTTCTTTCTCTCCTTNTATTTTTT
CCTCTCTCTCTTTTTTCCCTCTTCTTCCTTCTTCCCTCTCCCTCTCCTCT
TTCCTTTATCTANNTNTTTCTCTTTTTTTTTCCTTTTCTCACCTTCTCTT
TCTCTCCCTNCCCCTTCTTCTCTCTTCTCTCCTACTAGTATTTCTTCCCT
TTCTTCCCTCCCCCTTTTTCTCTCTCTTTTTG

Query= MSMg01no530_f03.b1 MSMg01no530_f03.b1 CHROMAT_FILE:
MSMg01no530_f03.b1 PHD_FILE: MSMg01no530_f03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:35 2005
         (701 letters)



>mm_chr6_109359727_109360825
          Length = 1099

 Score = 1319 bits (682), Expect = 0.0
 Identities = 693/697 (99%), Gaps = 2/697 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcccattttgtaaatgaacttcagtctgtctcagccataaacagtaaaccattcat 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcccattttgcaaatgaacttcagtctgtctcagccataaacagtaaaccattcat 264

                                                                       
Query: 65  tatgtctggtatgattttttttccactggtaaaggtgactttgtgctgttttcttataat 124
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tatgtctggtatgattttttt-ccactggtaaaggtgactttgtgctgttttcttataat 323

                                                                       
Query: 125 attctttcccaatggatgagctagcttctatatggatgtagaggcgtggatgctgataat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 attctttcccaatggatgagctagcttctatatggatgtagaggcgtggatgctgataat 383

                                                                       
Query: 185 tccactgagctaagaaaaaattatgagtgcaattttagatattaatatgtagaatattct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tccactgagctaagaaaaaattatgagtgcaattttagatattaatatgtagaatattct 443

                                                                       
Query: 245 ggcaaaaggaaagactgactaaacaagaaaaataaagggtagactttctgagcttcagac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggcaaaaggaaagactgactaaacaagaaaaataaagggtagactttctgagcttcagac 503

                                                                       
Query: 305 aattagagaatcagttaccataaaaaaaatgacagaagaataaaaagcattggaatgagc 364
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 504 aattagagaatcagttaccataaaaaaa-tgacagaagaataaaaagcattggaatgagc 562

                                                                       
Query: 365 aaaatagctgagcctttaggtgcagctgcattggaggctgctggcacagggaaactgaag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aaaatagctgagcctttaggtgcagctgcattggaggctgctggcacagggaaactgaag 622

                                                                       
Query: 425 gctaaataagtagaagctggtaccttgtgtggctgagaagcaccatctctccatgtcttt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gctaaataagtagaagctggtaccttgtgtggctgagaagcaccatctctccatgtcttt 682

                                                                       
Query: 485 tgcttactctggacaaaaactagaaagctgctagttatttatgaagtcttgtctactttg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tgcttactctggacaaaaactagaaagctgctagttatttatgaagtcttgtctactttg 742

                                                                       
Query: 545 gacttgtggttactgatgtcactgctaagttcccaggattatcatgagcaatgtctgtag 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gacttgtggttactgatgtcactgctaagttcccaggattatcatgagcaatgtctgtag 802

                                                                       
Query: 605 ctttttacaaactaactgcctgtgtggttgattgtaggtagtgtcagtttcagggtgggt 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 ctttttacaaactaactgcctgtgtggttgattgtaggtagtgtcagtttcagggtgggt 862

                                                
Query: 665 tgtttcangctgtgggttagtattttactattatata 701
           ||||||| |||||||||||||||||||||||||||||
Sbjct: 863 tgtttcaggctgtgggttagtattttactattatata 899


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1099
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1089
Effective search space:   752499
Effective search space used:   752499
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)