Query= MSMg01no531_b20.b1 MSMg01no531_b20.b1 CHROMAT_FILE:
MSMg01no531_b20.b1 PHD_FILE: MSMg01no531_b20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:39 2005
(690 letters)
>mm_chr6_148407208_148408297
Length = 1090
Score = 891 bits (461), Expect = 0.0
Identities = 511/551 (92%), Gaps = 36/551 (6%)
Strand = Plus / Minus
Query: 5 gaattcagatctttaatgagaatacatatcagatggagatctctgacaaggaaggcatta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gaattcagatctttaatgagaatacatatcagatggagatctctgacaaggaaggcatta 492
Query: 65 ataccgtccgagacagcctgtgagagcttacaacagtttgatacaagtggtgaagtaaag 124
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 491 ataccgtccgagacagcctgtgagagcttataacagtttgatacaagtggtgaagtaaag 432
Query: 125 ctatgggccaagccctctaagcagaatccagccattgctgacaacagaactcatagagat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ctatgggccaagccctctaagcagaatccagccattgctgacaacagaactcatagagat 372
Query: 185 tggcctttagccaatgaagattttggaaatatatcagagagaaaagggaaaaaaaaaaga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 371 tggcctttagccaatgaagattttggaaatatatcagagagaaaagggaaaaaaataaga 312
Query: 245 actataacatttctagataaacaccaaaggagaatatatctgttaggacaaggtcttaaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 actataacatttctagataaacaccaaaggagaatatatctgttaggacaaggtcttaaa 252
Query: 305 attttcagttaccaaggcctaggttctagaattgactgttgttcacaccaatt------- 357
|||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 attttcagctaccaaggcctaggttctagaattgactgttgttcacaccaattcagccta 192
Query: 358 -----------------------------cagcctaaccagcctaaccagcctaaccagc 388
|||||||||||||||||||||||||||||||
Sbjct: 191 accagcctaaccagcctaaccagcctaaccagcctaaccagcctaaccagcctaaccagc 132
Query: 389 ctaaccagcctaaccagcctaaccaggtgtgtctatcctatggcctacaggctgcataca 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 ctaaccagcctaaccagcctaaccaggtgtgtctatcctatggcctacaggctgcataca 72
Query: 449 tcccaggatactgatgataccttcatagatggcagggtcatgttgcaatgtcaaaaggtt 508
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 71 tcccaggatactgatgataccttcatagatggcagggtcatgttgcaatgtcaaaaggct 12
Query: 509 gtctactccaa 519
|||||||||||
Sbjct: 11 gtctactccaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space: 734400
Effective search space used: 734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no531_b20.g1 MSMg01no531_b20.g1 CHROMAT_FILE:
MSMg01no531_b20.g1 PHD_FILE: MSMg01no531_b20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:39 2005
(672 letters)
>mm_chr6_148379824_148380895
Length = 1072
Score = 1162 bits (601), Expect = 0.0
Identities = 652/677 (96%), Gaps = 17/677 (2%)
Strand = Plus / Plus
Query: 1 tttagagaatatagtctggttgaagtgaagaagaagaaaggcaagacttaatcaggatgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 tttagagaatatagtctggttgaagtgaagaagaagaaaggcaagacttaaccaggatgc 260
Query: 61 atcctagaaagagagacttgtgctggaagacatacagagtccacctcagagcccctgaac 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcctagaaagagagacttgtgcaggaagacatacagagtccacctcagagcccctgaac 320
Query: 121 gtcagtctgaatgttccaaatccactagtgagctaggtctggaaactgggttgaagggga 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcagtctgaatgttccaattccactagtgagctaggtctggaaactgggttgaagggga 380
Query: 181 gacttttcacagtagtagctctagtctactcctgtgccctcccctcacctcactcataca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacttttcacagtagtagctctagtctactcctgtgccctcccctcacctcactcataca 440
Query: 241 cacacacacatacatacttacacacacattcacatacattcatacactcattcacactct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacacacacatacatacttacacacacattcacatacattcatacactcattcacactct 500
Query: 301 cacacacattcacactcatgcacactctctctcactcacacacacatacatactcccaca 360
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 501 cacacacattcacactcatgcacactctc----actcacacacacatacatactcccaca 556
Query: 361 cattctctctcgcactaataaacacacactcacagacataaacacactcttacacacaca 420
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 cattctctctcacactaataaacacacactcacagacataaacacactcttacacacaca 616
Query: 421 ttcacactctctcacacacatacaatcacacacacatacacacattcacacacacacaca 480
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 617 ttcacactctctcacacacatacaatcacacacacatacacacatttacacacacaca-- 674
Query: 481 attatactctcatatacataaacacatgcacacaaacacacacattctctcacacacata 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 --tatactctcatatacataaacacatgcacacaaacacacacattctctcacacacata 732
Query: 541 catacacattctcacacacatacatactcacat----tctctcacatacatgcacacaca 596
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 733 catacacattctcacacacatacatactcacatacattctctcacatacatgcacacaca 792
Query: 597 cattcacatgctctctcacacacatacagagtcccatacacatacactcacacacacact 656
|||||||||||||||||||||||||||||||||||||| ||||||||||| | | ||
Sbjct: 793 cattcacatgctctctcacacacatacagagtcccata----tacactcacactctctct 848
Query: 657 ctctctctc-ctctctc 672
||||||||| |||||||
Sbjct: 849 ctctctctctctctctc 865
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 129
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space: 703044
Effective search space used: 703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
