BAC Information

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BAC

Clone NameMSMg01-531D08
Chromosome6 (Build37)
Map Location 52,803,299 - 52,803,899
singlet/doubletsinglet
Overlap geneJazf1
Upstream geneSkap2, LOC666391, Hoxa1, Hoxa2, Hoxa3, Hoxa4, Hoxa5, Hoxa6, Hoxa7, Hoxa9, Hoxa10, Hoxa11, Hoxa13, Evx1, EG666487, 1700094M24Rik, EG545841, Hibadh, Tax1bp1
Downstream geneLOC666259, LOC666516, D430007I03, Creb5, LOC384386, 1200009O22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-531D08.T7 (MSMg01no531_d08.b1)MSMg01-531D08.TJ (MSMg01no531_d08.g1)
ACCAG599665AG599666
length757759
length of high quality
(start - end)
675 (54 - 728)546 (78 - 623)
definitionCHROMAT_FILE: MSMg01no531_d08.b1 PHD_FILE: MSMg01no531_d08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:46 2005CHROMAT_FILE: MSMg01no531_d08.g1 PHD_FILE: MSMg01no531_d08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTTCTATTTTTTGCCGCGCTAATACGACTACTATTTCGAGAGGATCCGC
GGAATTCATGTTTTTTCATACTATATAGAGATAGACTCTAGATACACTTC
ATCTGGACTGCTAAGATAAATGCAGTTTGCCAGATGAAACACTTGATGTA
GACTCTGGAGCCATAGTATTCTGCTCGAATATCTCATCTGGGGGAAAAAA
AACTATTCTACAGAAACTGTAAAGTTCAAAATTGATTTGAATAAATTAAA
TATATAGGCTATTGGCCTGCAATCTAAGACCTGAGAGTGTGAAACCACAG
GAGGGACACAGGGCTTTGGGTTAGGAAAAAGTAGAAGAGGAGGAAGAGGA
AGAAGAGGAGGAAGAGGAGGAGGAGCCATACTAAACCATTAACAAAGCCA
TACTAAAAATAAAGGCTCCAGTATAAATGACATCATCAGTGCAGGACGCC
CACAGGAAGGCAGGGACATATGCAGAGCATGTATCTAGTAAGGTCTGTGT
ACAAAGCAGAGAAAGAATTTTACAACTCAACCATAGCAGGATAGACAACC
CAATTAAACAGTGGAAAACAGCATCTGGACAGAGATACCCTCAAAGACCA
CGTACAAATGGCTAGTGAGCATCTATGGAGGCTCAGCATCACTTCTGATG
GAGGCTCAGCATCACTTCTGATGGAGGCTCAGCATCAGCATCACTGGTCA
TTATGGAAATGCACGTTTAAGACACAGGAGATTGTGCTTTGGACCCACGA
GAATGGC
CTTCCATTTTTTGTGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATGGATGCAGCTTCCCTGTCATA
TATAGAAGACATTGTTTCACAGCAGATCTCCTGGCTCGCTGGCTCTTAAA
ATCTTTCTACCCTCTCTTCCATCAATTTCCCTGAGTCCTAGGTATAGGTG
TAGCATTGGCAACGTATGCGTTTGGGTTGGTTACATCATGCTCACTTATT
CTCTGCATTTTGACTAGTTGTGGATCTCTGTTCTAGTGTCCACATATGTT
GCTAAAAGAAACTTCTTTGATTAGGATTAGGAGCTACACTTCTGTAGATA
TACATAAGGTACACTTACAGATATAAGCTACACTCATATCCATAGTTACC
TATGGATCTAAGGCTAAATATTCAGAGTGCATTTAGACATTACATTGGTC
TTAGAAAATGGCAGCTTTAGGCTCTCTCCGTTTTGTGACCTCCCCGGTCA
CAGGTAGTTGGCTATAGCCCTGCAGTGCCAGGCATAAATTCCCGTCTCTT
GAATGGGCATTAGGTCTAGTTGGTCAGCTGTTGGTTACCCCCAAGCTAGG
CGTGCCACTGTCACACCATTGCAGATATCCTGCTGGCCCAGTCTTTGTTG
TGACTCACAGGAACAGCTGGGTAGGACTACCAGTTGCTCCTCTTCTTGGC
CCTTCTACCCACCTCCCAGCCCTTTGAGAGCAGTTCTCAGGGAATGTACT
CTAGTCAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no531_d08.b1 MSMg01no531_d08.b1 CHROMAT_FILE:
MSMg01no531_d08.b1 PHD_FILE: MSMg01no531_d08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:46 2005
         (675 letters)



>mm_chr6_52803086_52804161
          Length = 1076

 Score = 1100 bits (569), Expect = 0.0
 Identities = 593/601 (98%), Gaps = 1/601 (0%)
 Strand = Plus / Plus

                                                                       
Query: 14  catactatatagagatagactctagatacacttcatctggactgctaagataaatgcagt 73
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 catactatatagagatagactctagatacacttcatctggactgctaagataaatgcagt 273

                                                                       
Query: 74  ttgccagatgaaacacttgatgtagactctggagccatagtattctgctcgaatatctca 133
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ttgccagatgaaacacttgatgtagactctggagccatagtattctgctcgaatatctca 333

                                                                       
Query: 134 tctgggggaaaaaaaa-ctattctacagaaactgtaaagttcaaaattgatttgaataaa 192
           ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tctggggaaaaaaaaacctattctacagaaactgtaaagttcaaaattgatttgaataaa 393

                                                                       
Query: 193 ttaaatatataggctattggcctgcaatctaagacctgagagtgtgaaaccacaggaggg 252
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ttaaatatataggctattggtctgcaatctaagacctgagagtgtgaaaccacaggaggg 453

                                                                       
Query: 253 acacagggctttgggttaggaaaaagtagaagaggaggaagaggaagaagaggaggaaga 312
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 acacagggctttgggttaggaaaaagtagaagaggaggaagaggaagaagaggaggaaga 513

                                                                       
Query: 313 ggaggaggagccatactaaaccattaacaaagccatactaaaaataaaggctccagtata 372
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ggaggaggagccatacaaaaccattaacaaagccatactaaaaataaaggctccagtata 573

                                                                       
Query: 373 aatgacatcatcagtgcaggacgcccacaggaaggcagggacatatgcagagcatgtatc 432
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 aatgacaccatcagtgcaggacgcccacaggaaggcagggacatatgcagagcatgtatc 633

                                                                       
Query: 433 tagtaaggtctgtgtacaaagcagagaaagaattttacaactcaaccatagcaggataga 492
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 tagtaaggtctgtgtacaaagcagagaaagaattttacaactcaaccatagcaggataga 693

                                                                       
Query: 493 caacccaattaaacagtggaaaacagcatctggacagagataccctcaaagaccacgtac 552
           ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 694 caacccaattaaatagtggaaaacagcatctggacatagataccctcaaagaccacgtac 753

                                                                       
Query: 553 aaatggctagtgagcatctatggaggctcagcatcacttctgatggaggctcagcatcac 612
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 754 aaatggctagtgagcatctatggatgctcagcatcacttctgatggaggctcagcatcac 813

            
Query: 613 t 613
           |
Sbjct: 814 t 814


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1076
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1066
Effective search space:   708890
Effective search space used:   708890
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)