NNNNNGCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTATATTTATATATTTTGAAATGGCATCTTCAAACACTTA
TTTTAGCTGCTTCCTGCATCTCACCGATTGACACCCATGAGCAACTTGGA
TTCTTCTTGGTCAATTTTTTAAAGTAATTAATTACAAGTAATACAATTTT
AGTGCCTTTTGACTTTATGGCTTATTTAATCTGCTCTTAAAGTTCATATA
TAAAATGTCTCATAAATTTAATGTTCAATATCATGGTATTTTACATTAAA
ACTACCTACAGTAATTGTAGTTACCCTATCAAATTTAGCAAAATGCTTGC
TATACAAGAATAAATTCAACTATTGTTGTGGAAACACCTGTGTATTTACT
TTGTGCTTTTTATTTTATACAAAATAAAAAATAGAAAATACACTTTGATT
TCAGTACATAACTTCATATTATTTAGAGAAAAATAAGCAACATATATGAT
TTTGTTTTTTAATCTTTTTATAATTTTATTGATTATTTCATTTATTGGGG
TCCCCATGATCTGTCTGATGGTGTGCATCTGCATCTGTATTGGTCAGACT
CTGGCAAAGCCTATCAGGGAACAGCTATACCAGGCTCCTATCAGCAAGTA
CTTCATTGCATCAGCAATAGTGTCTGGGTTTGGTGTGTGCAGATGGGTTG
GATCCCTATGTATGGCAGTCTCTGGATGGCCATTCCTTN

GGCAATTTTTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGGTTTAGTTCTATAT
CTCATTTTTTGATTGGGTTGTTCGGTTTTTTGGTTTTTAACTTCTGGAAT
TTTTTATATATTTTGGATATTAGCCCTTTGTCGGATGTGGGGGTTAGTTA
AGATTTTTCCCAGTCTGTAGGTTGCCACTTTTTCTTATTGAGTATGTCCT
CTGCCTTACAGAAGCTTTCCAGTTTCATGAGGTACCATTTATCAATTGTT
GATTTTAGAGCATGAGCCATACGAGTTCTATTTAGGAAATTTCCCTTGTG
TGAATGAATTCAAGGCTCTTTTCCACTCTCTTCTATTAGATTCAGTGTAT
CTGGTTTTATGTTGAGGTCCTTGATCCACTTGGACTTGAGCTCTGTACAA
GGCGACCAATAAGGGTCTGTTTCATTCTTCTACATACAGACAGCCAGTTA
GACCAGCACCATTTACTGAAAATGCTTTATTTTTTCCATTGTATTATTTT
GGTGTCTTTGTCAAAGATTAAATGACCATAAGTGCGAGGTTTTATTTCTG
GGCCTTCAATTCTGTTGTATTGATCAACATGTCTGTCTTTATACCAATAC
CATGCATTTTTTATCACTATTGCTCTGTAGTAAAGCTTGAGGTCAGGGAT
GGTGATTCCCCAGCTTTTCTTTTA

Query= MSMg01no532_f18.b1 MSMg01no532_f18.b1 CHROMAT_FILE:
MSMg01no532_f18.b1 PHD_FILE: MSMg01no532_f18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:16 2005
         (671 letters)



>mm_chr6_63043538_63044608
          Length = 1071

 Score = 1259 bits (651), Expect = 0.0
 Identities = 663/667 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctatatttatatattttgaaatggcatcttcaaacacttattttagctgcttcct 64
           |||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 205 gaattctatatttagatattttgaaatggcatcttcaaactcttatttcagctgcttcct 264

                                                                       
Query: 65  gcatctcaccgattgacacccatgagcaacttggattcttcttggtcaattttttaaagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcatctcaccgattgacacccatgagcaacttggattcttcttggtcaattttttaaagt 324

                                                                       
Query: 125 aattaattacaagtaatacaattttagtgccttttgactttatggcttatttaatctgct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aattaattacaagtaatacaattttagtgccttttgactttatggcttatttaatctgct 384

                                                                       
Query: 185 cttaaagttcatatataaaatgtctcataaatttaatgttcaatatcatggtattttaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttaaagttcatatataaaatgtctcataaatttaatgttcaatatcatggtattttaca 444

                                                                       
Query: 245 ttaaaactacctacagtaattgtagttaccctatcaaatttagcaaaatgcttgctatac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttaaaactacctacagtaattgtagttaccctatcaaatttagcaaaatgcttgctatac 504

                                                                       
Query: 305 aagaataaattcaactattgttgtggaaacacctgtgtatttactttgtgctttttattt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aagaataaattcaactattgttgtggaaacacctgtgtatttactttgtgctttttattt 564

                                                                       
Query: 365 tatacaaaataaaaaatagaaaatacactttgatttcagtacataacttcatattattta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tatacaaaataaaaaatagaaaatacactttgatttcagtacataacttcatattattta 624

                                                                       
Query: 425 gagaaaaataagcaacatatatgattttgttttttaatctttttataattttattgatta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gagaaaaataagcaacatatatgattttgttttttaatctttttataattttattgatta 684

                                                                       
Query: 485 tttcatttattggggtccccatgatctgtctgatggtgtgcatctgcatctgtattggtc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tttcatttattggggtccccatgatctgtctgatggtgtgcatctgcatctgtattggtc 744

                                                                       
Query: 545 agactctggcaaagcctatcagggaacagctataccaggctcctatcagcaagtacttca 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 agactctggcaaagcctatcagggaacagctataccaggctcctatcagcaagtacttca 804

                                                                       
Query: 605 ttgcatcagcaatagtgtctgggtttggtgtgtgcagatgggttggatccctatgtatgg 664
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 805 ttgcatcagcaatagtgtctgggtttggtgtgtgcagatgggttggatgcctatgtatgg 864

                  
Query: 665 cagtctc 671
           |||||||
Sbjct: 865 cagtctc 871


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space:   701321
Effective search space used:   701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)