NAGACCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTTTCCCTGTTCTCCATTGTGGAGTGCAGATGATTGACGCAC
CAAACATCGACAGTGAGATCAGTCAATCTTGTTGATTCAACAAAAGTTAC
CACCTGCCATCAAAGTCTTTTCAGTTCCTGAAGCTAACTTGCAAAACAGG
TGTAATAATCACACCTGGAAATGTTGAGCAGAGTTGACATTCTTTATCTT
CCCTGTGGAGTAATGATTTGAGAAAGAAGAGAGAGGAAATCATTCCATTC
TAAGCATAACCTTGAGTTATTAACAGTATTTAAAAACAAACACTACTGCA
TTTCTGATGGTGAGAAGCAGAAGCCTTCCTGGACTTATCTGACCTGCTGC
CCACTGTAGTTCTTTTGCAAATTGAAATCAATATCAATAGAACTTGAGAA
ATTTGAGCATTAACTATAGGTAGGTTAGGATACACTGTGATTTTTTTAAC
ATGTTCGTTGAGAGGAAAGACCAAATGGTGGATAATAATGAAAGTTTAGA
GCAATTCTCTTTTGAATATAAATATCCTTATTATCTTTAAGCTCCTGATC
TTCGAGGTTAGCTGCATAATGTAATCTCTTGGGATATATATTTCCTAAGG
TATAAATAATTTAAATATGCACGGTGAGATACGTCCTGAATCAATCAAAT
TAAAAAAAAAACACTTCTCTATGTTATTTTAATGCATAGTTGGAGTGG

GGCGGACTGCGGCCCCCCCCAGAGTCTCCTATCACTCCTACATGTGAGAC
ACTAAAAAGAAACACGAACACTTAATATACTTTATTATACTTGCACAGAG
GTAGTGGATTATGATTTAGCGAGGGGGGCGTGGGGGTGGCAGAGTTCAGA
AGTCAGAAACAAAACAGGGGGTAAATGAAAACTATTACATAGGATGAGTT
AGAGCGGATGCTTATGCGCGCGTTATCATACGTTTATATAAGAGACTATA
AAACAAATTATATTAATCCACCCGCGAATCTGGCGAGGGGAAAAAGGGTA
AAAAAAGCTGAGTTTAAGTATAACATCGAACAGAAATCAAACAAAAAAAA
ATAATTAAAAAAGAGAGAAGAAAAATGTAAGTTATAGTAAAAATCGATGC
AAACGAAGGAGAGATAAAAGAATAACAAATAAGAAACGCCACGCCACAAA
ATAAAAGGAAAAAACAAGCAGGAATAAAGCATAGTGTGATATGAGGATGT
ATACCATGCAAAAAAAAACCAATAACATATTAAAAGACCGNNNNNNNNGC
CCCCNNNTNNNNNNGGCATATGACATAATGTATATAGNAGCATNAGGCAA
ANNNGCANNNTGNNNNNGTTCGAAATNNNTANNNAGGNTNANGNCNGGAT
TNANGAGNNAGCAGAGTTCCTTGGACANANNNANCGTGGGNGNANGANNG
CCTAAGCNAGTNACGANCNACGNAGATTGCCGANGNNNTNNNNAAGCCAN
TGCTAACCTTANNNGGNCNCAGNTTCAAAAGTCA

Query= MSMg01no532_j01.b1 MSMg01no532_j01.b1 CHROMAT_FILE:
MSMg01no532_j01.b1 PHD_FILE: MSMg01no532_j01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:31 2005
         (624 letters)



>mm_chr6_101945152_101946175
          Length = 1024

 Score = 1168 bits (604), Expect = 0.0
 Identities = 616/620 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctttccctgttctccattgtggagtgcagatgattgacgcaccaaacatcgaca 64
           ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 824 gaattcctttccctgttttccattgtggagtgcagatgattgacacaccaaacatcgaca 765

                                                                       
Query: 65  gtgagatcagtcaatcttgttgattcaacaaaagttaccacctgccatcaaagtcttttc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 gtgagatcagtcaatcttgttgattcaacaaaagttaccacctgccatcaaagtcttttc 705

                                                                       
Query: 125 agttcctgaagctaacttgcaaaacaggtgtaataatcacacctggaaatgttgagcaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 agttcctgaagctaacttgcaaaacaggtgtaataatcacacctggaaatgttgagcaga 645

                                                                       
Query: 185 gttgacattctttatcttccctgtggagtaatgatttgagaaagaagagagaggaaatca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 gttgacattctttatcttccctgtggagtaatgatttgagaaagaagagagaggaaatca 585

                                                                       
Query: 245 ttccattctaagcataaccttgagttattaacagtatttaaaaacaaacactactgcatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 ttccattctaagcataaccttgagttattaacagtatttaaaaacaaacactactgcatt 525

                                                                       
Query: 305 tctgatggtgagaagcagaagccttcctggacttatctgacctgctgcccactgtagttc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tctgatggtgagaagcagaagccttcctggacttatctgacctgctgcccactgtagttc 465

                                                                       
Query: 365 ttttgcaaattgaaatcaatatcaatagaacttgagaaatttgagcattaactataggta 424
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tgttgcaaattgaaatcaatatcaatagaacttgagaaatttgagcattaactataggta 405

                                                                       
Query: 425 ggttaggatacactgtgatttttttaacatgttcgttgagaggaaagaccaaatggtgga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ggttaggatacactgtgatttttttaacatgttcgttgagaggaaagaccaaatggtgga 345

                                                                       
Query: 485 taataatgaaagtttagagcaattctcttttgaatataaatatccttattatctttaagc 544
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 344 taataatgaaagtttagagcaattctcttttgaatgtaaatatccttattatctttaagc 285

                                                                       
Query: 545 tcctgatcttcgaggttagctgcataatgtaatctcttgggatatatatttcctaaggta 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tcctgatcttcgaggttagctgcataatgtaatctcttgggatatatatttcctaaggta 225

                               
Query: 605 taaataatttaaatatgcac 624
           ||||||||||||||||||||
Sbjct: 224 taaataatttaaatatgcac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space:   622596
Effective search space used:   622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)