NAATGTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATGGCTAATGATCCATGAATTTATAATCCAGGATGATTCA
TAATTGAGTGAGCCACCTTATTTTACTCCTCTCTTACAGGAAAGGTTCAA
AGTGAAAGACCAGAATATTCAGTAAAGAAACGTGAAAGTCTCCAAAGTTG
AGCCACAGTCAATGGTAATAATGTCTAGTGAAAATGAAATATTTAACATC
CATATTTAGGCGCTCACTCATTCATTATGTGGCCGTGTAAGGGGTGTCAA
ATGTTGATGGGAATTTCAATTTGACCTGGCAAAAATGAAGTAAGCAACAT
ACAGTATTTCATCCACTCTGTCCATTTTCACCATGAAAGATTAGCTCCCT
AGTACTCTTTATTCAATCCAATGTCAAGGTCTTAAAAACAAATTTCTAAA
GCACTTAAGAGGTTCTTTGAACAGCTGTATTTAGTAACAAATGACAGATA
TCTATTAATACAAGTGCGTCTTATATAAAATATTTTAATGTGGATTTTTT
GGCGATAGTATATTCTTATTAGCATCAGGTATAAATTGACATATCACAGG
AGTTCTTTCAGATGAAAGATCCATTTAGTCTCATCTTCAAATTATGGATT
GATACAATATTCTGCACCATAATGGTTCGAANAGCATTGTTAGTGTGATG
TATTATTCATGCTTTCAGGTGCCATTGTTTCAGATCACAGCAGAGTGCCT
CACCACTCAN

NNNAACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGTGTAGAAGTCTCATGA
AAACATCTGGCAGCTGCTGGGTGACTTGGGTTGTTCTATGTGAGTTGTTG
TTGTTGGTGGTGGTGGTAGTGGTGGTGGTGNNGNNGNNNNNGNNGNCGNN
GGCGGCGGNGGNGGNGGGGNGGCGCGGGGGGCGGGGCGTGCCGCGGGCCG
CGGTGCCGGCGCGGCGTCTGGGCGGCCGCGTGCGCGCGTCGCGTCCCTGG
CGTGGTTGCTCCCCCGCGGCCTGTTTGGCCGCTGTTTTTTTGTTCCGTCG
TGTCTTTGTTTTGCCCTTTTTTCTTCCTCTTTCCCGTCCTGTGTTNGCGG
CGGCGGGGCGGTTGCGTTCCGTTCGTTCGTTGTGTTCCCCCCGTTTCGTT
CTCTCTCTGTCCTGCCCTCCTTTTTTCGTCTTTTCCTTTCTTTCCTTCTC
TCTTCGGCGCTTTTTTTTCTCGCTTTTTCTTTTCCCGCGTCTGCTCCTTC
TCGTCCCTTTTCCTTCTTCTTTTTCTCTTTGCTTTTCCGCCCCGCTTTTT
CTTCTCTGCTTTCTCTCTCTTCTCTTCTTCTTCCCTCTCTTTCCTTTGCT
CTTTTTTGCTCCTTTCTGTGCTCCTTGGCCCGTGCCTGCTGTGTCTGTGC
TTTCTCTCGTCTTCTTTCTCTCTGTCCGTCACTGCTCCCTTTTTGTTTCC
CTTTTGTCCCTTCCTGTCTTCCCTTTTCTCTTCTTTGCTCTCTTGTGTCG
CGCCCGTCTCTCTTCTATCGTTCTGTCTTTCGCCTTCTCTCTCTCCCTCA
TGTTCCTTTCATTTCTTG

Query= MSMg01no532_l21.b1 MSMg01no532_l21.b1 CHROMAT_FILE:
MSMg01no532_l21.b1 PHD_FILE: MSMg01no532_l21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:45 2005
         (642 letters)



>mm_chr6_98430518_98431559
          Length = 1042

 Score = 1212 bits (627), Expect = 0.0
 Identities = 635/638 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatggctaatgatccatgaatttataatccaggatgattcataattgagtgagcc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 gaattcatggctaatgatccatgaatttataatccaggatgattcataattgagtgagcc 783

                                                                       
Query: 65  accttattttactcctctcttacaggaaaggttcaaagtgaaagaccagaatattcagta 124
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 782 accttattttactcctctcttacaggaaaggttcacagtgaaagaccagaatattcagta 723

                                                                       
Query: 125 aagaaacgtgaaagtctccaaagttgagccacagtcaatggtaataatgtctagtgaaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 aagaaacgtgaaagtctccaaagttgagccacagtcaatggtaataatgtctagtgaaaa 663

                                                                       
Query: 185 tgaaatatttaacatccatatttaggcgctcactcattcattatgtggccgtgtaagggg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 662 tgaaatatttaacatccatatttaggcgctcactcattcattatgtggctgtgtaagggg 603

                                                                       
Query: 245 tgtcaaatgttgatgggaatttcaatttgacctggcaaaaatgaagtaagcaacatacag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 tgtcaaatgttgatgggaatttcaatttgacctggcaaaaatgaagtaagcaacatacag 543

                                                                       
Query: 305 tatttcatccactctgtccattttcaccatgaaagattagctccctagtactctttattc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 tatttcatccactctgtccattttcaccatgaaagattagctccctagtactctttattc 483

                                                                       
Query: 365 aatccaatgtcaaggtcttaaaaacaaatttctaaagcacttaagaggttctttgaacag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 aatccaatgtcaaggtcttaaaaacaaatttctaaagcacttaagaggttctttgaacag 423

                                                                       
Query: 425 ctgtatttagtaacaaatgacagatatctattaatacaagtgcgtcttatataaaatatt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ctgtatttagtaacaaatgacagatatctattaatacaagtgcgtcttatataaaatatt 363

                                                                       
Query: 485 ttaatgtggattttttggcgatagtatattcttattagcatcaggtataaattgacatat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ttaatgtggattttttggcgatagtatattcttattagcatcaggtataaattgacatat 303

                                                                       
Query: 545 cacaggagttctttcagatgaaagatccatttagtctcatcttcaaattatggattgata 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 cacaggagttctttcagatgaaagatccatttagtctcatcttcaaattatggattgata 243

                                                 
Query: 605 caatattctgcaccataatggttcgaanagcattgtta 642
           ||||||||||||||||||||||||||| ||||||||||
Sbjct: 242 caatattctgcaccataatggttcgaaaagcattgtta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space:   652224
Effective search space used:   652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)