Query= MSMg01no532_m06.b1 MSMg01no532_m06.b1 CHROMAT_FILE:
MSMg01no532_m06.b1 PHD_FILE: MSMg01no532_m06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:47 2005
(455 letters)
>mm_chr6_114778635_114779487
Length = 853
Score = 828 bits (428), Expect = 0.0
Identities = 445/452 (98%), Gaps = 4/452 (0%)
Strand = Plus / Plus
Query: 5 gaattcattaatcttggtaggaattatacatctaaataataaagttggcaaaaaaaaaaa 64
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattaatcaaggtaggaattatacatctaaataataaagttggcaaaaaaaaaaa 264
Query: 65 aaactgatcagcatgacaacaaagacaaacctggggtgacagtggtgacagtgctccaag 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ---ctgatcagcatgacaacaaagacaaacctggggtgacagtggtgacagtgctccaag 321
Query: 125 gcaccagagagttggaggtagggcagcttgttccaagaaggctgttggttttggtttgtt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gcaccagagagttggaggtagggcagcttgttccaagaaggctgttggttttggtttgtt 381
Query: 185 tttttt-aaggtatatttatctttatttggtgtatatgaatgtttgcctgcatgtattta 243
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tttttttaaggtatatttatctttatttggtgtatatgaatgtttgcctgcatgtattta 441
Query: 244 tgagtaccatgtgtgtgcctggtgtctgaggaagccagaagaaggcattagggcattagt 303
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tgagtaccatgtgtgtgcccggtgtctgaggaagccagaagaaggcattagggcattagt 501
Query: 304 tacaaatagttgtaagcctccatgtgggtgctgggaaccaatctggatccaagcttgcag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tacaaatagttgtaagcctccatgtgggtgctgggaaccaatctggatccaagcttgcag 561
Query: 364 gtggttgaaagctactcagtgtagatgctcagaacctagctcagtgtgttctcttaactg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gtggttgaaagctactcagtgtagatgctcagaacctagctcagtgtgttctcttaactg 621
Query: 424 ccgagccatctctgcagccttccaggaagatc 455
||||||||||||||||||||||||||||||||
Sbjct: 622 ccgagccatctctgcagccttccaggaagatc 653
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 853
Length adjustment: 10
Effective length of query: 445
Effective length of database: 843
Effective search space: 375135
Effective search space used: 375135
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no532_m06.g1 MSMg01no532_m06.g1 CHROMAT_FILE:
MSMg01no532_m06.g1 PHD_FILE: MSMg01no532_m06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:47 2005
(486 letters)
>mm_chr6_114916142_114917025
Length = 884
Score = 859 bits (444), Expect = 0.0
Identities = 470/486 (96%), Gaps = 15/486 (3%)
Strand = Plus / Minus
Query: 1 cagaagagtaatgagctttgctcagactttgtgtcaggcttagaaaggcctctgaggggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 cagaagagtaatgagctttgctcagactttgtgtcaggcttagaaaggcctctgaggggt 647
Query: 61 ttaaagtgcttcataaacttggtccaggatgctggttccccagctggcttcccagtgact 120
|||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 646 ttaaagtgcttcataaacttggtccaggatgctggttc------------cccagtgact 599
Query: 121 tgaaggtttcaatacctcttgcagacatggctttgagagtaaaactttcaccattaaata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 tgaaggtttcaatacctcttgcagacatggctttgagagtaaaactttcaccattaaata 539
Query: 181 ttctgtaagggaaagttcctttccgtccttctggaagtcagccttgtaaccttcctctgg 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 538 ttctgtaagggaaagttcctttccgt-cttctggaagtcagccttgtaaccttcctctgg 480
Query: 241 tggttgccaaggcaaccatcccagcagcagagtcctcctttgtgtctcctaagggtgcct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tggttgccaaggcaaccatcccagcagcagagtcctcctttgtgtctcctaagggtgcct 420
Query: 301 tttatagattatctgtacaactttaagaagaaaaaaaaaaccaacagaaaaacgaatgat 360
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 419 tttatagattatctgtacaactttaagaag-aaaaaaaaaccaacagaaaaacgaatgat 361
Query: 361 aataaaagctgggtcatgggtctggggatggtcaggtaggtgaaggtcatgggtctgggg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 aataaaagctgggtcatgggtctggggatggtcaggtaggtgaaggtcatgggtctgggg 301
Query: 421 atggtcaggtaggtgaagtctttactgaaggagcgtgaggacccaagtttcatatcccca 480
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 300 atggtcaggtaggtgaagtctttactgaaggagcgtgaggacccaag-ttcagatcccca 242
Query: 481 gtaccc 486
||||||
Sbjct: 241 gtaccc 236
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 884
Length adjustment: 10
Effective length of query: 476
Effective length of database: 874
Effective search space: 416024
Effective search space used: 416024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
