BAC Information

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BAC

Clone NameMSMg01-532O10
Chromosome6 (Build37)
Map Location 56,595,680 - 56,596,344
singlet/doubletsinglet
Overlap geneEG666688
Upstream geneLOC100042219, Neurod6, LOC100041339, Ccdc129, Gsbs, LOC100041357, Pde1c
Downstream geneLsm5, 5830411G16Rik, LOC100042288, Kbtbd2, Fkbp9, Nt5c3, LOC100042327, V1rc21, V1rc19, V1rc20, EG434016, V1rc32, V1rc30, V1rc1, V1rc3, EG626397, V1rc4, V1rc5, V1rc7, V1rc6, LOC100041445, V1r-ps6, V1rc29, V1rc16, V1rc26, V1rc27, EG434017, LOC666822, Ppm1k, Herc5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-532O10.T7 (MSMg01no532_o10.b1)MSMg01-532O10.TJ (MSMg01no532_o10.g1)
ACCAG600950AG600951
length744746
length of high quality
(start - end)		695 (50 - 744)665 (82 - 746)
definitionCHROMAT_FILE: MSMg01no532_o10.b1 PHD_FILE: MSMg01no532_o10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:57 2005CHROMAT_FILE: MSMg01no532_o10.g1 PHD_FILE: MSMg01no532_o10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGTGAGATGCTTACCTATTCAGTAACATTCAAATTTACTTC
TAGCAGAGATGGGGAAACTAATTATGCATTGCAAAGAACGGAGCTAGAAT
AGCTCAGGGCTAGTCTGCAGAGTGATTACTTGGGACAGTAGCCAGTCTCA
CCCAAACAAGGAAATACACAATGGCCTAGTGAATAGGTAGGTTTACCATG
AAGAGTGAGGGAATCCCCCAGACAGGTTTCTTCATGTGGCCCAAAGAAAC
AGCATAAATCAGGCATTTACTAAGAACCCCTAGTGGTAGGCTTAACAATA
GACTAGCATTACACCTGGCTCCCTTCTTAGTGGTAAACACGGCCTGGTCC
GTGCCATCTTTTGATGTATACATTCCTTTTGTATTGTGTCACTGTAACTT
AGTGGATGTGTTCGCCTGGTTTCTTGTTACTCTTCTGTATAAAAAGTTTG
ATGCTCGATTTGACAAATTACACTCAGAGTCTTCACACTCTCTTGTGTCG
CTTCTGTTTGTCACTCTATGCCCATCTGTCCGAGACTCTGATTTGCACGG
ATTAAGGAGGGCCCACTGAGCCCGGTCTGTGGCATAGATGTTTTGCTTGC
ATGCATATCTGTGTACCACGTGAAGAATATTTAAATACAGTATAATTTGG
GAGAGAAGTTTTTTTGGTATAATACAATCCTGGTGTCATCTCAG

NGGGCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCTTACTTGATTGTTCCT
TGTGGCTTGCTCAGCCTGCTTTCTTATACAACCCAAGACCACCTGCTCAG
GGTTGGTACCACCCACAATGAGCTAGGCTCTCCCACATCAATCATTAATT
AAGAAAGTGCCCTTCAGATTTGCCTACAAGTCACCCAATTGATGACAGCA
TTTATTTGACTGAAGTTTTTCTTTCCAGACAGCACTAGGTTGTGTCAAAC
TAACAAAATATAGCCAGGACAACAGCCATTGGCTTCATCCATTGAGAAAA
CTATGAAGATGGGATAATAAAGAGACCTCTCTGTGTCTCTTATACTACTA
GTACAGTGGAGATCATAAGCATTCTTTCCATCAAGTCGTTCACCAGCAAG
AACAAATGCATCTCTTGTGCCTGGAGATGCATTTGGCCGAAGAGCTTGGT
GCCCTCTGCTATAATTTAAATCTGACTCTAGAAAAGAAAAATGACTCGTA
ATTACCACGGGAGAGAATCAAAGGAAAATGGTTATGTGACTTCTCAGCTG
TGATAGGACTCAGAGTCAAGGACAGCTTCCCCATCCCCAACTCCCCGGGT
GAAGGAAGAGAGTTAGGAGGGCAGCCCCTGGAGGTGACTGCTCCATCCAA
GAGCCTAGCACTTGCTCATCACATGTCCTTGTTCCCTCCAGGCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no532_o10.g1 MSMg01no532_o10.g1 CHROMAT_FILE:
MSMg01no532_o10.g1 PHD_FILE: MSMg01no532_o10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:58 2005
         (665 letters)



>mm_chr6_56595480_56596544
          Length = 1065

 Score = 1208 bits (625), Expect = 0.0
 Identities = 655/665 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcttacttgattgttccttgtggcttgctcagcctgctttcttatacaacccaagacca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcttacttgattgttccttgtggcttgctcagcctgctttcttatacaacccaagacca 260

                                                                       
Query: 61  cctgctcagggttggtaccacccacaatgagctaggctctcccacatcaatcattaatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgctcagggttggtaccacccacaatgagctaggctctcccacatcaatcattaatta 320

                                                                       
Query: 121 agaaagtgcccttcagatttgcctacaagtcacccaattgatgacagcatttatttgact 180
           ||||||||||||||||||||||||||| |||||| |||||||| | ||||||||||||||
Sbjct: 321 agaaagtgcccttcagatttgcctacaggtcacctaattgatggcggcatttatttgact 380

                                                                       
Query: 181 gaagtttttctttccagacagcactaggttgtgtcaaactaacaaaatatagccaggaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaagtttttctttccagacagcactaggttgtgtcaaactaacaaaatatagccaggaca 440

                                                                       
Query: 241 acagccattggcttcatccattgagaaaactatgaagatgggataataaagagacctctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acagccattggcttcatccattgagaaaactatgaagatgggataataaagagacctctc 500

                                                                       
Query: 301 tgtgtctcttatactactagtacagtggagatcataagcattctttccatcaagtcgttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtgtctcttatactactagtacagtggagatcataagcattctttccatcaagtcgttc 560

                                                                       
Query: 361 accagcaagaacaaatgcatctcttgtgcctggagatgcatttggccgaagagcttggtg 420
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 561 accagcaagaacaaatgcatctcttgtgcctggagatgcatttagccgaagagcttggtg 620

                                                                       
Query: 421 ccctctgctataatttaaatctgactctagaaaagaaaaatgactcgtaattaccacggg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 621 ccctctgctataatttaaatctgactctagaaaagaaaaatgactcgtaattaccacagg 680

                                                                       
Query: 481 agagaatcaaaggaaaatggttatgtgacttctcagctgtgataggactcagagtcaagg 540
           ||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 681 agagaataaaaggaaaatggttgtgtggcttctcagctgtgataggactcagagtcaagg 740

                                                                       
Query: 541 acagcttccccatccccaactccccgggtgaaggaagagagttaggagggcagcccctgg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acagcttccccatccccaactccccgggtgaaggaagagagttaggagggcagcccctgg 800

                                                                       
Query: 601 aggtgactgctccatccaagagcctagcacttgctcatcacatgtccttgttccctccag 660
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aggtgactgctccatccaggagcctagcacttgctcatcacatgtccttgttccctccag 860

                
Query: 661 gcctc 665
           |||||
Sbjct: 861 gcctc 865


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space:   691025
Effective search space used:   691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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