BAC Information

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BAC

Clone NameMSMg01-533F03
Chromosome6 (Build37)
Map Location 57,035,109 - 57,035,735
singlet/doubletsinglet
Overlap genenone
Upstream genePde1c, EG666688, Lsm5, 5830411G16Rik, LOC100042288, Kbtbd2, Fkbp9, Nt5c3, LOC100042327, V1rc21, V1rc19, V1rc20, EG434016, V1rc32, V1rc30
Downstream geneV1rc1, V1rc3, EG626397, V1rc4, V1rc5, V1rc7, V1rc6, LOC100041445, V1r-ps6, V1rc29, V1rc16, V1rc26, V1rc27, EG434017, LOC666822, Ppm1k, Herc5, Pigy, Lancl2, AW146242, V1rc28, LOC626582, V1rc23, V1rc24, LOC100041514, V1rc18, V1rc8, V1rc17, EG633683, LOC626649, LOC626659
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-533F03.T7 (MSMg01no533_f03.b1)MSMg01-533F03.TJ (MSMg01no533_f03.g1)
ACCAG601270AG601271
length735761
length of high quality
(start - end)		646 (56 - 701)653 (80 - 732)
definitionCHROMAT_FILE: MSMg01no533_f03.b1 PHD_FILE: MSMg01no533_f03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:30 2005CHROMAT_FILE: MSMg01no533_f03.g1 PHD_FILE: MSMg01no533_f03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:30 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CCCTAATTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCTATGAGCTTCCTAAATTATATAGTTGTGTCTTTGG
GACAGTTTTCTTCTATGATCGTATTGAAGTTCTTATGATTGCCATAGACT
TCAAGTTCTTCTCTATCATCTGTGACTATAATTTGAAGGTTTGATTCTTT
TCATGGTGTCCCACATACACAATACTTGTTAGGCATGCACTCTATTGACT
AAGATACATTTCCAGTCCCACAGCACTATTTCTGCTGACAGTACACTTAC
GTTACTTCCTGAATTTTTTAAATTAACTTTTAAAAGATATTTTCTTTATT
TACTTTTCAAATGTTGTCCCATTTCCTGGTTTCCTCTCTGAAAAACCACC
CTCCCTCCTCCATCCCCCTGCTCACCAACCCACCTACTCCTATTCCTGGC
CCTGGCATTCCCCTATACTGGGGATAGAACCTTTACAGGACCAGGGGCCT
CTCCTCCGATTGATTACTGACTAGGCCATCCTCTCCTATATATGCAGCTA
GAGCCATGAGTCCCACCATGTGTTTTCTTTGGTTGGTGGTTTAGTCCGAG
GGAGCTCTTGGGGTACTGGTTAGTTCATATTGTTCTTCCTATGGGGCTGC
AACCCCCCTTCAGCTTCTTGGGTACTTTCTTTAGCTGCTTCATTTGGGAC
CCTGTGCTCAGTCCAATGGATGGCTGTGAGTCTCC

NTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGTGACAAGATTCACGGTGT
CTGGTGTACTGTTCATTGTGAGCAGCAAGAAGTCTTTAGGGATTTCAGGA
GATAAAGAACTTAGCCACCCAAACTTGTTTCATGGAAACTTTATGAAATA
TGTAATGGCAACAGAACTACATCTTGATCACACATTAATAAAGAATGAAT
TCATTGCCATTGCCTGATACTCTTAAATAATTTAAATGCAAAAATTGTTT
TTGAAAATTGAGTTTAGAGCAGGTGTAACTGGAAGTACACAGACACTGCC
TAGAATATTACATTCCCACACTTACAAGCCAGTTCCCCTGAGATGAAGCA
GCAGCAGCAGAAGTGTTACTTAAGAGACTATAGGGAAGCAATCATACCCA
AAGCACAAGTTACATGACATTAGTTTGTGAAAGATATAAGAATATTAATT
GAAAATGTGTGTACGTACATGTGTACATGTGTATGTGTGTACATGTTTCT
GTGTGTGTGAAATTATTGCACTATTGGCCCAAGAATAGAACACTAGCATA
GTGTGTTGCAGGAGTACTAACAAGAATACCTGTGCATCACTTGAGTGAAA
GACTGAATTATATAAAATTCCCATTTCAAATATGTTCCTTAAAATATTGC
ATATGAGACTATGTTTTACATATATATCAGTATACATCCACTGTAAAAAC
TAATGCATTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no533_f03.g1 MSMg01no533_f03.g1 CHROMAT_FILE:
MSMg01no533_f03.g1 PHD_FILE: MSMg01no533_f03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:30 2005
         (653 letters)



>mm_chr6_57035109_57036161
          Length = 1053

 Score = 1183 bits (612), Expect = 0.0
 Identities = 624/628 (99%), Gaps = 2/628 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggtgacaagattcacggtgtctggtgtactgttcattgtgagcagcaagaagtctttag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 aggtgacaagattcacggtgtctggtgtactgttcattgtgagcagcaagaagtctttag 568

                                                                       
Query: 61  ggatttcaggagataaagaacttagccacccaaacttgtttcatggaaactttatgaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ggatttcaggagataaagaacttagccacccaaacttgtttcatggaaactttatgaaat 508

                                                                       
Query: 121 atgtaatggcaacagaactacatcttgatcacacattaataaagaatgaattcattgcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 atgtaatggcaacagaactacatcttgatcacacattaataaagaatgaattcattgcca 448

                                                                       
Query: 181 ttgcctgatactcttaaataatttaaatgcaaaaattgtttttgaaaattgagtttagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ttgcctgatactcttaaataatttaaatgcaaaaattgtttttgaaaattgagtttagag 388

                                                                       
Query: 241 caggtgtaactggaagtacacagacactgcctagaatattacattcccacacttacaagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 caggtgtaactggaagtacacagacactgcctagaatattacattcccacacttacaagc 328

                                                                       
Query: 301 cagttcccctgagatgaagcagcagcagcagaagtgttacttaagagactatagggaagc 360
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 327 cagttcccctgagatgaagcagcagcagtagaagtgttacttaagagactatagggaagc 268

                                                                       
Query: 361 aatcatacccaaagcacaagttacatgacattagtttgtgaaagatataagaatattaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aatcatacccaaagcacaagttacatgacattagtttgtgaaagatataagaatattaat 208

                                                                       
Query: 421 tgaaaatgtgtgtacgtacatgtgtacatgtgtatgtgtgtacatgtttctgtgtgtgtg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 tgaaaatgtgtgtacgtacatgtgtacatgtgtatgtgtgtacatgtttctgtgtgtgtg 148

                                                                       
Query: 481 aaattattgcactattggcccaagaatagaacactagcatagtgtgttgcaggag-tact 539
           |||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 147 aaattattgcactactggcccaagaatagaacactagcatagtgtgttgcagg-gctact 89

                                                                       
Query: 540 aacaagaatacctgtgcatcacttgagtgaaagactgaattatataaaattcccatttca 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88  aacaagaatacctgtgcatcacttgagtgaaagactgaattatataaaattcccatttca 29

                                       
Query: 600 aatatgttccttaaaatattgcatatga 627
           ||||||||||||||||||||||||||||
Sbjct: 28  aatatgttccttaaaatattgcatatga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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