BAC Information

Click to search

BAC

Clone NameMSMg01-534D04
Chromosome6 (Build37)
Map Location 127,541,904 - 127,703,342
singlet/doubletdoublet
Overlap geneEfcab4b, Prmt8
Upstream geneKcna1, Kcna6, LOC667463, Ndufa9, Akap3, Dyrk4, Rad51ap1, D6Wsu163e, LOC667473, LOC624256, Fgf6, Fgf23, 9630033F20Rik, Ccnd2, Tpi-rs11, EG243642, LOC100043578, EG640703, LOC100043848, Parp11
Downstream geneTspan11, Tspan9, LOC100043853, LOC667560, Tead4, LOC652986, Tulp3, 5930416I19Rik, Foxm1, Nrip2, Itfg2, Fkbp4, EG667598, Pzp, LOC384494, EG667610, BC048546, Klrb1a, EG545878, LOC677440, Clec2h, LOC100043863, LOC100043861
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-534D04.T7 (MSMg01no534_d04.b1)MSMg01-534D04.TJ (MSMg01no534_d04.g1)
ACCAG601940AG601941
length726736
length of high quality
(start - end)
666 (43 - 708)503 (67 - 569)
definitionCHROMAT_FILE: MSMg01no534_d04.b1 PHD_FILE: MSMg01no534_d04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:37 2005CHROMAT_FILE: MSMg01no534_d04.g1 PHD_FILE: MSMg01no534_d04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,541,904 - 127,542,566)(127,702,841 - 127,703,342)
sequence
TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACCACAGTCCTGGTTACAGAAACACACTCCCTAGAAAACCGAATGGCA
ACTGAGAACGTATTTTGAGGCAAATTATGTGTCCCTACTGGACCTGAGCA
CCAGGAACATTCTAGGGGTGCTTGTGGAGGTACTGTAGTGTTCGGTGACC
CAGGCGTCTTGAGCACTGGCCACTGTGCCCAGTGCTGACACCAGGCTACA
TGTTCAGGCTTGGGGACCCCTCCCTTTTCAGAACCCAGGAGAGAGATCCT
TAGGGACCTGATGACAAGCCCAGGACAGCAATCTAGCTACCAACATCTGC
AAGAGAAAGGGCTCACCCCCAAAGCAAGCTCCCCTGCCTTTGTTCATACC
GTCTCCAAATAGGATTGCCTCAAGGACCTTCCAAGTGTGGGTCTGCAGAG
GTTGCTCGGTGGGTAAGGTGCTTGCTCTGTGAGCAGGGGGGTTCTGAGTT
TCCATCCCTAGCGCTCACTTAAAAAGTCACACACAGTGGTGCATGCTTGT
AGTCCCAGTGCTGAGAGGGCAGAGATGGAGGGTCCCTGAGGTTTTCTGGC
CAGTCAGTCTAGTCAACCTATGAGTTCCAGGTCCAATGAAAAACCTTGTT
TTGGAAAACAGAAAGCTTGAAATGCAAATGAGGAAGATGCATGATGTCAA
CCTCTGGCCTTCATGCACACACATGA
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTTCCCGAAGAATTCAGTCCCATGCCTGGCTCAGGCAGACCTGTGC
CCTACCATATATACCTTTCGAAAGGCTTTTATCCCATCCAGCTTTAGCTA
ATGAATACGGCACTGTGGCGTGTCCTCTAAGGAGCCTATAGTGACTTAGT
GGATCTTGGGATCTTTCTCCAGCCTCAGTCCAGAAGGACAAAGAGGATCT
GGACAGAGAATGGGGCAGGGCAGACGTGACTGCCCCTTGATGACAAATTG
CTCTGTCTGAGTCTTAGAGTTGGCTTTGGGGCCACACTGTCAGGTGCTGT
GTTCATCTCCCAGGCCCTTCTGAACTCAGTGAGCCCTGCAAAGAGGAGGT
AGCTTGTCCCTTTTTTGAGGCCCAACGAGGCTAGCACCTGGCTGGCTTAG
TGTTGAGATTGGCTGTGGCCCCAGGACCTTCTTGGCTCATCTTGTCAGAA
CTGCCAGGAATGCTGGGGAACAGACTGGTGCTGGCTGCTGCTGCTGCAGA
GTGGGGGTAGTGTGGGGGTGCGGGGGAGGTCTGGATATTATCTGCCCTCT
GTCCTTGTAGATCTTCTGACTACATATTTTTCACTGTCTCGAAATGAATT
AAGCTTGTAATCTTCAAAACTGATTCTTCCTGGTTTCCCTTCTTTCTCGG
TTCGCGGATATATCTCTCTAACTTTCTTTGGGCCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no534_d04.b1 MSMg01no534_d04.b1 CHROMAT_FILE:
MSMg01no534_d04.b1 PHD_FILE: MSMg01no534_d04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:37 2005
         (666 letters)



>mm_chr6_127541701_127542766
          Length = 1066

 Score = 1251 bits (647), Expect = 0.0
 Identities = 659/663 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaccacagtcctggttacagaaacacactccctagaaaaccgaatggcaactga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaccacagtcctggttacagaaacacactccctagaaaaccgaatggcaactga 263

                                                                       
Query: 64  gaacgtattttgaggcaaattatgtgtccctactggacctgagcaccaggaacattctag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gaacgtattttgaggcaaattatgtgtccctactggacctgagcaccaggaacattctag 323

                                                                       
Query: 124 gggtgcttgtggaggtactgtagtgttcggtgacccaggcgtcttgagcactggccactg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gggtgcttgtggaggtactgtagtgttcggtgacccaggcgtcttgagcactggccactg 383

                                                                       
Query: 184 tgcccagtgctgacaccaggctacatgttcaggcttggggacccctcccttttcagaacc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgcccagtgctgacaccaggctacatgttcaggcttggggacccctcccttttcagaacc 443

                                                                       
Query: 244 caggagagagatccttagggacctgatgacaagcccaggacagcaatctagctaccaaca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 caggagagagatccttagggacctgatgacaagcccaggacagcaatctagctaccaaca 503

                                                                       
Query: 304 tctgcaagagaaagggctcacccccaaagcaagctcccctgcctttgttcataccgtctc 363
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tctggaagagaaagggctcacccccaaagcaagctcccctgcctttgttcataccgtctc 563

                                                                       
Query: 364 caaataggattgcctcaaggaccttccaagtgtgggtctgcagaggttgctcggtgggta 423
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 caaataggattgcttcaaggaccttccaagtgtgggtctgcagaggttgctcggtgggta 623

                                                                       
Query: 424 aggtgcttgctctgtgagcaggggggttctgagtttccatccctagcgctcacttaaaaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aggtgcttgctctgtgagcaggggggttctgagtttccatccctagcgctcacttaaaaa 683

                                                                       
Query: 484 gtcacacacagtggtgcatgcttgtagtcccagtgctgagagggcagagatggagggtcc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 684 gtcacacacagtggtgcatgcttgtagtcccagtgctgagagggcagaggtggagggtcc 743

                                                                       
Query: 544 ctgaggttttctggccagtcagtctagtcaacctatgagttccaggtccaatgaaaaacc 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ctgaggttttctggccagtcagtctagtcaacctatgagttccaggtccaatgaaaaacc 803

                                                                       
Query: 604 ttgttttggaaaacagaaagcttgaaatgcaaatgaggaagatgcatgatgtcaacctct 663
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ttgttttggaaaacagaaagtttgaaatgcaaatgaggaagatgcatgatgtcaacctct 863

              
Query: 664 ggc 666
           |||
Sbjct: 864 ggc 866


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space:   692736
Effective search space used:   692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no534_d04.g1 MSMg01no534_d04.g1 CHROMAT_FILE:
MSMg01no534_d04.g1 PHD_FILE: MSMg01no534_d04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:37 2005
         (503 letters)



>mm_chr6_127702641_127703543
          Length = 903

 Score =  932 bits (482), Expect = 0.0
 Identities = 497/502 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcagtcccatgcctggctcaggcagacctgtgccctaccatatatacctttcgaaaggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 ttcagtcccatgcctggctcaggcagacctgtgccctaccatatatacctttcgaaaggc 643

                                                                       
Query: 61  ttttatcccatccagctttagctaatgaatacggcactgtggcgtgtcctctaaggagcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 ttttatcccatccagctttagctaatgaatacggcactgtggcgtgtcctctaaggagcc 583

                                                                       
Query: 121 tatagtgacttagtggatcttgggatctttctccagcctcagtccagaaggacaaagagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 tatagtgacttagtggatcttgggatctttctccagcctcagtccagaaggacaaagagg 523

                                                                       
Query: 181 atctggacagagaatggggcagggcagacgtgactgccccttgatgacaaattgctctgt 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 522 atctggacagagaatggggcagggcagatgtgactgccccttgatgacaaattgctctgt 463

                                                                       
Query: 241 ctgagtcttagagttggctttggggccacactgtcaggtgctgtgttcatctcccaggcc 300
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ctgagtcagagagttggctttggggccacactgtcaggtgctgtgttcatctcccaggcc 403

                                                                       
Query: 301 cttctgaactcagtgagccctgcaaagaggaggtagcttgtcccttttttgaggcccaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 402 cttctgaactcagtgagccctgcaaagaggaggtagcttgtcccttttttgaggctcaac 343

                                                                       
Query: 361 gaggctagcacctggctggcttagtgttgagattggctgtggccccaggaccttcttggc 420
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 342 gaggctagcacctggctggcttagtgttgggattggctgtggccccaggaccttcttggc 283

                                                                       
Query: 421 tcatcttgtcagaactgccaggaatgctggggaacagactggtgctggctgctgctgctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 tcatcttgtcagaactgccaggaatgctggggaacagactggtgctggctgctgctgctg 223

                                 
Query: 481 cagagtgggggtagtgtggggg 502
           ||||||||||||||||||||||
Sbjct: 222 cagagtgggggtagtgtggggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)