Query= MSMg01no534_i07.b1 MSMg01no534_i07.b1 CHROMAT_FILE:
MSMg01no534_i07.b1 PHD_FILE: MSMg01no534_i07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:04 2005
(549 letters)
>mm_chr6_115400665_115401613
Length = 949
Score = 890 bits (460), Expect = 0.0
Identities = 478/486 (98%), Gaps = 5/486 (1%)
Strand = Plus / Minus
Query: 65 taaagcagtaataaccaacacatgtgattataattctgcttttaagctgttttt-aaaaa 123
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 949 taaagcagtaataaccaacacatgtgattataattctgcttttaagctgtttttaaaaaa 890
Query: 124 atatttcaaagcaacatatatatcatgataaccattatatttgcatcaagacatcagttt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889 atatttcaaagcaacatatatatcatgataaccattatatttgcatcaagacatcagttt 830
Query: 184 ttccaaagatccttttcttaacacacacacacacacacacacacacacacacacacacac 243
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 829 ttccaaagatccttttctta----acacacacacacacacacacacacacacacacacac 774
Query: 244 acacacacacacacacacatacacgaataatagtttatagggccaggacactgggttgaa 303
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 773 acacacacacacacacacatacacgaataagagtttatagggccaggacactgggttgaa 714
Query: 304 ggcctgttgaacttcccactaaggatatcaagcaagtagtagaacatgcctatttgttta 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 ggcctgttgaacttcccactaaggatatcaagcaagtagtagaacatgcctatttgttta 654
Query: 364 gtattcattgcatgtgccctgccaaatgaagggttcaatctaaaagctgaaaggcgctgg 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 653 gtattcattgcatgtgccctgccaaatgaagggttcaatctaaaagctgaaaggtgctgg 594
Query: 424 cctacacgaagaagctctcatcaggatgactttgaaacttaatgctctttagaagaattt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 cctacacgaagaagctctcatcaggatgactttgaaacttaatgctctttagaagaattt 534
Query: 484 actcgcttccattagttgtcctagtgcctactgacctggacctggtattggccaggagag 543
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 533 actcgcttccattagttgtcctagtgcctactgacctggacctggcattggccaggagag 474
Query: 544 ttacaa 549
||||||
Sbjct: 473 ttacaa 468
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 96
Number of extensions: 30
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space: 506121
Effective search space used: 506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no534_i07.g1 MSMg01no534_i07.g1 CHROMAT_FILE:
MSMg01no534_i07.g1 PHD_FILE: MSMg01no534_i07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:04 2005
(630 letters)
>mm_chr6_115235068_115236097
Length = 1030
Score = 1089 bits (563), Expect = 0.0
Identities = 622/661 (94%), Gaps = 31/661 (4%)
Strand = Plus / Plus
Query: 1 tctgagtttaaatatgttagggattcagataaggtccgataaggtatggaaagaggatga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 tctgagtttaaatatgttagggattcagataaggtccgataaggtatggaaagaggatga 229
Query: 61 ataagatgagttaagcaagtctaagacagacagcaagctgtacgtgtctcagtggagcgt 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 230 ataagatgagttaagcaagtgtaagacagacagcaagctgtacgtgtctcagtggagcgt 289
Query: 121 atgtctagctccgggtcagaaaagcctccatcacaggtaagggagagctgggatgagtcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 atgtctagctccgggtcagaaaagcctccatcacaggtaagggagagctgggatgagtcc 349
Query: 181 acaagatccggaggcctgtaggcgagggggggcgg---ttacaaagaattcatttacagt 237
||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct: 350 acaagatccggaggcctgtaggcaagggggggggggggttacaaagaattcatttacagt 409
Query: 238 ttcatagttgaaagcaacaattagtcttattgcctgtttacagatgagaaaactgaggcc 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 ttcatagttgaaagcaacaattagtcttattgcctgtttacagatgagaaaactgaggcc 469
Query: 298 caggtaccttggacatttaccaca----------------------------aatgaatg 329
|||||||||||||||||||||||| ||||||||
Sbjct: 470 caggtaccttggacatttaccacagtcatgaagggagttagtgacatagacaaatgaatg 529
Query: 330 agccttaatactgtctttagggtctttagggttaggacttgtccttcctgaaacaaacag 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 agccttaatactgtctttagggtctttagggttaggacttgtccttcctgaaacaaacag 589
Query: 390 aatgggtttcatttctaaggagaggtgcatagaggcaggtgataggccaggaggaagtgg 449
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 590 aatgggtttcatttctaaggagaggtgtatagaggcaggtgataggccaggaggaagtgg 649
Query: 450 gaagatattgttagccaatgaaaagagcctgagtcaagtctgagtttgcatccaggctct 509
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 650 gaagatattgttagccaatgaaaagagcctgaatcaagtctgagtttgcatccaggctct 709
Query: 510 gctaattattgactgatttgaccttgcaagcaattagtttttctgtctcaaaatgccctt 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 gctaattattgactgatttgaccttgcaagcaattagtttttctgtctcaaaatgccctt 769
Query: 570 ttctgggtgagtttaaggattagatgaggtaaatgtccactcctaacaatgtctatttct 629
||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||
Sbjct: 770 ttctgggtgagtttaaggattagatgaagtaaatgtccactcctaaaaatggctatttct 829
Query: 630 g 630
|
Sbjct: 830 g 830
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space: 632400
Effective search space used: 632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
