BAC Information

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BAC

Clone NameMSMg01-534K14
Chromosome6 (Build37)
Map Location 13,977,965 - 13,978,655
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC384350, Tmem106b, Gm467, Gm725, 1700016P04Rik, LOC100040478, Tmem168, B630005N14Rik, Gpr85, 2610001J05Rik, LOC100041043
Downstream geneLOC100040513, LOC667797, Ppp1r3a, Foxp2, LOC100040568
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-534K14.T7 (MSMg01no534_k14.b1)MSMg01-534K14.TJ (MSMg01no534_k14.g1)
ACCAG602294AG602295
length1,200756
length of high quality
(start - end)		---691 (66 - 756)
definitionCHROMAT_FILE: MSMg01no534_k14.b1 PHD_FILE: MSMg01no534_k14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:15 2005CHROMAT_FILE: MSMg01no534_k14.g1 PHD_FILE: MSMg01no534_k14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCACTTTCAGTATACCTGCCCCGCCCGCTCGGCGGCGTGTGCTCGTTCC
CACTGCTTTTTGCTTGCCTCGTGGCGGCGCTCCGCCTACTACTGCCTTCT
GTCGATGCGCGCCGCTCTGTCGTTTCGCTGTGTGCTGGCGCCCGCCTGTT
TGTCCCACTGTCTCTTTGTCTGTCTCGCCCGCGTGCTAGTCTCCTTCTCT
CCTCATTTGTGGCGCCCTCGTGTATGTTCCGTTGCCCGTTTGCGCTGCCC
CTCTGTTTCTCCCGTTCTCGGCTGTCCACTCTCCCTCTTTTGTCTGTGTC
TTTGTGCCGCCGCGTTGGCGTGTTTTTGCTCGGTTCGCGGCCGGGCGCGC
GCCCCTTTTTGTTACCCGCTCTGCTCCGTTCTGGGGTTTCCGGGCTCGTT
TCCCGCCGCCCTTTTGGTCTCGCCTCGCGCATTATGTGGGGCGGGGTCGG
CGTTGGCGCCTCTCCTGCTCTGCCCTCTCCTACTCGCCCCGCTTTATCGC
GTTTCTGCGCCGGTTCCCCGTCTGCCGCCCGGCGTGCGACGGGTATGTCG
CCCCTCTTCCTCGTGTACGTTGTCCCGCTCTCTTTTCTCCCTTGCCTGCT
TTTTTCTCCATCGGGTGTTGTTCGTTCGGCGCCTGTTGTTCGTTGTTCCG
TGTCCGCNCGTTTTCGTTGTGTTGTCCGCTGTTGCGCCTGCTCCCCTTGC
GTCGCTCGTCCTTCTACGTCTTGGGCTTTCTTGCCTCTCTGTCGCTCTTA
CCTGTATACCGNCGTCTGCACTCCGTCCTCTCCCGTCCGCGGTGTCACTT
TACTTCCGCCTTCTCGTCTCGTCTCCGTGCGACCAGTCTCCCCGTTTCGC
GCTGATTCGTCGCNGGCGCGCTTTCCGGCGCTACTCTTCTCTGTGTGCTC
GTGCCTCNGTCTCGCGATTTGTCTTGTGTGTTGTCGCCTCCGCCCTCCCC
GCTTTGTCGTTTCGCTTGCGTCCGCGTCGTGTGTGTTGCCGCGTTTTCGC
CGTTCCTTGTTGCCGTCCCGCGCTTCGCATACCGCGCCGTCTGCTATTGT
TTTTCCTTTGCTTTCTCTGCGTGTGTGTCCGCTGCGGATTTACGCCGACT
TTCTGTATGCCGTGCGCGCTCTCCTGTGTATCTGTCGTGCCAGCGTGCGT
CGCTCCTTGCGTGCGTCTCGCTTTCGGTCCCATACGTGTGTGTCGTCGCN


TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAAGGCATCTCTGAGGCTCTGTACAAAAACATCTCA
TAGGAGAGGTGGGCCAGAGCCTGTGATGCTGTATGGTCTGGAGTAGCCAC
AGACAGAATAAGAGCACCTCCAGTCTCCACTGCCAGTGAACACTTGTGTC
TAGAATGCCATGTTCTATTTCAATTTTTTACCTTTGTCCAAATTCATGGA
CTATGAATATCAATATTGTAAATCTATGATAGATTTAAAAATCAAGGTGA
CTCTCCTAATAAATATGACTGATTTATTATACTGATTCTTTGTGTGGTAA
ATCACTTGGGATTTATGCAAATGTTGTTCCATCTTCATGACATGATATAT
TCTAAGCTACAGTATCTGCCTCTTTTTTTCTACGGGGTTGGTGAAGGAGG
AGGGTGCATTAAGTTAATTTGAAATCTAGCTAAATTCTTAAATTCATTAC
CTCTTCATTTTTAGATTAGAGCAAATATTTTGGTAGATTGAGCAAATCAT
ATTGCTTTTAGTAGATAAAGCAATAAGTGGATGCTGAGATTAATTAAGAG
AGGAAAAGCTTAATCTTTTAATCAATCTCCAGGGTTATTTAGTGTGAATA
TATTCCAAAGTGATCAAGACGGTGTAATCCAAACACTGAACGGGAATGCC
TAGTCTAGCAAAATCAGAACCTTGCCTGTGCTTTGCCAGGATTTATACAT
ACTGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no534_k14.g1 MSMg01no534_k14.g1 CHROMAT_FILE:
MSMg01no534_k14.g1 PHD_FILE: MSMg01no534_k14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:15 2005
         (691 letters)



>mm_chr6_13977765_13978855
          Length = 1091

 Score = 1290 bits (667), Expect = 0.0
 Identities = 685/691 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggcatctctgaggctctgtacaaaaacatctcataggagaggtgggccagagcctgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891 aaggcatctctgaggctctgtacaaaaacatctcataggagaggtgggccagagcctgtg 832

                                                                       
Query: 61  atgctgtatggtctggagtagccacagacagaataagagcacctccagtctccactgcca 120
            ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 831 ctgctgtatggtctggagtagccacagacagagtaagagcacctccagtctccactgcca 772

                                                                       
Query: 121 gtgaacacttgtgtctagaatgccatgttctatttcaattttttacctttgtccaaattc 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 gtgaacatttgtgtctagaatgccatgttctatttcaattttttacctttgtccaaattc 712

                                                                       
Query: 181 atggactatgaatatcaatattgtaaatctatgatagatttaaaaatcaaggtgactctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 atggactatgaatatcaatattgtaaatctatgatagatttaaaaatcaaggtgactctc 652

                                                                       
Query: 241 ctaataaatatgactgatttattatactgattctttgtgtggtaaatcacttgggattta 300
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 651 ctaataaatatgactgatttattattctgattctttgtgtggtaaatcacttgggattta 592

                                                                       
Query: 301 tgcaaatgttgttccatcttcatgacatgatatattctaagctacagtatctgcctcttt 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 591 tgcaaatgttgttccatcttcatgacatgatatattctaagctacagtatctgccttttt 532

                                                                       
Query: 361 ttttctacggggttggtgaaggaggagggtgcattaagttaatttgaaatctagctaaat 420
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 531 ttttctacggggttggtgaaggaggagggtgcgttaagttaatttgaaatctagctaaat 472

                                                                       
Query: 421 tcttaaattcattacctcttcatttttagattagagcaaatattttggtagattgagcaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tcttaaattcattacctcttcatttttagattagagcaaatattttggtagattgagcaa 412

                                                                       
Query: 481 atcatattgcttttagtagataaagcaataagtggatgctgagattaattaagagaggaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 atcatattgcttttagtagataaagcaataagtggatgctgagattaattaagagaggaa 352

                                                                       
Query: 541 aagcttaatcttttaatcaatctccagggttatttagtgtgaatatattccaaagtgatc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 aagcttaatcttttaatcaatctccagggttatttagtgtgaatatattccaaagtgatc 292

                                                                       
Query: 601 aagacggtgtaatccaaacactgaacgggaatgcctagtctagcaaaatcagaaccttgc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 aagacggtgtaatccaaacactgaacgggaatgcctagtctagcaaaatcagaaccttgc 232

                                          
Query: 661 ctgtgctttgccaggatttatacatactgta 691
           |||||||||||||||||||||||||||||||
Sbjct: 231 ctgtgctttgccaggatttatacatactgta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1091
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1081
Effective search space:   736161
Effective search space used:   736161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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