BAC Information

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BAC

Clone NameMSMg01-535B09
Chromosome6 (Build37)
Map Location 142,773,714 - 142,774,209
singlet/doubletsinglet
Overlap geneSt8sia1
Upstream geneSlco1a4, LOC100042750, EG664913, Slco1a1, EG625716, Slco1a6, Slco1a5, Iapp, BC027061, Recql, Golt1b, B230216G23Rik, Gys2, Ldhb, Kcnj8, Abcc9, 5330439B14Rik, Cmas, Gm766, EG665037
Downstream geneLOC665056, 5730419I09Rik, Etnk1, D6Ertd474e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-535B09.T7 (MSMg01no535_b09.b1)MSMg01-535B09.TJ (MSMg01no535_b09.g1)
ACCAG602619AG602620
length7651,034
length of high quality
(start - end)		675 (49 - 723)---
definitionCHROMAT_FILE: MSMg01no535_b09.b1 PHD_FILE: MSMg01no535_b09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:48 2005CHROMAT_FILE: MSMg01no535_b09.g1 PHD_FILE: MSMg01no535_b09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCTTTTTGAGTCAACCGCGACTTAAGAATTTGTTGATTCTCA
AGCTCCCAAGTGAGGGCGGCTGCTGCTTGATTTTAATCACACTTCAGTAA
AAATTAAGCTAGGTGAAGAGCGAGTCATCCCAGCAGAAGGAAAGCTTTTA
CATGAGAGAGCTTTTCTCAGAAGATGACTCTTAGTGCTTTGCCAAAGTAT
ATTTTTAAAAAATTGTGTGCCTAAACCAGATTGTTCACGTTTATGACTTT
GAAAAAGGAGGGGGCATGGGAGACTCTCACCCTTGAGGCCTGAATGCCCT
TGCAGGGTCCTGAGTTCAGGTTCTGACACACAATTACCCACGCACAGCTA
ACTGTTACTCCAGGTCCAGGACAGCTGGTGTCCTCTTCTGGTCTCCACGG
ACACTGAATGCAAGCAAGAACATACACATAATAAATAAATGAATGAATAA
ATAAATAAATCTTAATAAAGGTAGAGAGTTAATTCTCTAAAATGGCAGAT
GTTCAGGTAGTGTCCTTTGTGCTTCTTCGCTGGGAAGCCAGACATCTATA
GTTTTATTTTTTTCATGTTTGAAAATACCAAGTTCATAGACTCTTCCACT
GGCAAATCATTGTCAGGAAAGATCTAATGAGAAAATCAGTCACGAGTCCA
CTGAATGGTTTTTACCTTATAAAATACAGTGCTGTGGTATAGATGCTTCC
CCAATGGTTTTTACN

NGACCTTATAAACTGTGAGTGNCGAGAAGAAAATGGTGTTTCAAAAAAAA
GGGGGAAGGAAGAGTTATTTTTTCCCCACAAAAGGGAGGAGATGGAAAGG
TTAGAGACTGGAACAATACTATGGACGGTGTTTTTTAGGCTATTTTAGGG
CGCTGGTAGAGAGGGTGTGTTTGGGTCGAGGGTTATATTGTAGTATGAAA
CTTGTCCTGAGTTTTATTGTATATGTACTACGAGCACGCGCGCTTCTGTA
CCGATGATAATGTTGGTAAACGGAAGGAGGTTGAGAGAGTCAAATATTTG
AAAGAAGAGACGCACTAACGAGAACGACTTCAATGATGTAAACTGTAGCC
TCAAAAGCATATAGTCAATCTGTGGCGACCATACATTTTTTAAGAAAATA
AAAAAATATTACAAACCATAAGTTTTCATGATTAACAAAATTTTAGCAAT
TATATCAAAATTATACAAATAACACTTGTGAGCTACATAATCAATTCACA
ACTATGAATCATCTATGTTATTTCTACATAGCTATTTAATTACAATCTTA
TTTACATATTATAACTAGCCTACTAAAACTATTTTGTTTTTATAAATATC
ATCAATATAAAACATATATCTATCTTAAATGCTTTCTTGAGTAGAAGATG
AACTAATGTTTCCGCACTATATCACTATCACATAGCTAAATATTACGTAT
TAGCTAGGTGAGAATATACATTTCCGAATATGAGATCAATATAATTTATA
CTCTGTTTTTATATCGTTATGAATAATAAATTCACTGTTCTCTCTACTCA
CCGTTGCCATTTTCAATAATAGTTATACTACATTACAGTTATTTAAAGCA
ATGTATGACAATTAACACCATTCACCATTTGTTTACCTATTATATTGCAT
GACAGATCTATATTCAAATAGAGTATACATAATTCACAAACCAATATATA
TCATATATCATATAACCTATATTACCGTACCATTCATCCTGATTGCTATT
ACGTCATACTCACATACATCTCTTTACTATATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no535_b09.b1 MSMg01no535_b09.b1 CHROMAT_FILE:
MSMg01no535_b09.b1 PHD_FILE: MSMg01no535_b09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:48 2005
         (675 letters)



>mm_chr6_142773714_142774788
          Length = 1075

 Score =  909 bits (470), Expect = 0.0
 Identities = 490/498 (98%), Gaps = 4/498 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctctttttgagtcaaccgcgacttaagaatttgttgattctcaagctcccaagt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ggaattctctttttgagtcaaccgcgacttaagaatttgttgattctcaagctcccaagt 437

                                                                       
Query: 64  gagggcggctgctgcttgattttaatcacacttcagtaaaaattaagctaggtgaagagc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gagggcggctgctgcttgattttaatcacacttcagtaaaaattaagctaggtgaagagc 377

                                                                       
Query: 124 gagtcatcccagcagaaggaaagcttttacatgagagagcttttctcagaagatgactct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gagtcatcccagcagaaggaaagcttttacatgagagagcttttctcagaagatgactct 317

                                                                       
Query: 184 tagtgctttgccaaagtatatttttaaaaaattgtgtgcctaaaccagattgttcacgtt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tagtgctttgccaaagtatatttttaaaaaattgtgtgcctaaaccagattgttcacgtt 257

                                                                       
Query: 244 tatgactttgaaaaaggagggggcatgggagactctcacccttgaggcctgaatgccctt 303
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 256 tatgactttgaaaaaggagggggcacgggagactctcacccttgaggcctgaatgccctt 197

                                                                       
Query: 304 gcagggtcctgagttcaggttctga--cacacaattacccacgcacagctaactgttact 361
           |||||||||||||||||||||||||  |||||  |||||||| |||||||||||||||||
Sbjct: 196 gcagggtcctgagttcaggttctgatgcacac--ttacccacacacagctaactgttact 139

                                                                       
Query: 362 ccaggtccaggacagctggtgtcctcttctggtctccacggacactgaatgcaagcaaga 421
           |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 138 ccaggtccaggacagctggtgtcctcctctggtctccatggacactgaatgcaagcaaga 79

                                                                       
Query: 422 acatacacataataaataaatgaatgaataaataaataaatcttaataaaggtagagagt 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78  acatacacataataaataaatgaatgaataaataaataaatcttaataaaggtagagagt 19

                             
Query: 482 taattctctaaaatggca 499
           ||||||||||||||||||
Sbjct: 18  taattctctaaaatggca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space:   708225
Effective search space used:   708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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