Query= MSMg01no535_l22.b1 MSMg01no535_l22.b1 CHROMAT_FILE:
MSMg01no535_l22.b1 PHD_FILE: MSMg01no535_l22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:39 2005
(611 letters)
>mm_chr6_112759326_112760334
Length = 1009
Score = 1154 bits (597), Expect = 0.0
Identities = 604/607 (99%), Gaps = 2/607 (0%)
Strand = Plus / Plus
Query: 5 gaattcagagcacatagaccgcttagggtcttgtatagactaagcactcattaatccttt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagagcacatagaccgcttagggtcttgtatagactaagcactcattaatccttt 264
Query: 65 ctttgctacaattccttatctgctgtcataatagcactagtctatgagtactgaacgatt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctttgctacaattccttatctgctgtcataatagcactagtctatgagtactgaacgatt 324
Query: 125 ggaaaagcctgctgaggcctgcctcacaggctgtctccctaggagacacaggaggcaggc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggaaaagcctgctgaggcctgcctcacaggctgtctccctaggagacacaggaggcaggc 384
Query: 185 tgaggtctctcatctctttgttctccccgccccaatgcagacctcactgctggaccctcc 244
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 385 tgaggtctctcatctctttgttctccccgccccagtgcagacctcactgctggaccctcc 444
Query: 245 agcttgcaaaccctcactctctcctgcaagggagaaaaaaaaatgaaaaataaacttggc 304
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 445 agcttgcaaaccctcactctctcctgcaagggag--aaaaaaatgaaaaataaacttggc 502
Query: 305 tttgaatccaaggccatggctgcttttgatctctgttacaaagcaaagcaattatcggac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tttgaatccaaggccatggctgcttttgatctctgttacaaagcaaagcaattatcggac 562
Query: 365 acaaaagccttgatttatttatgaaattcgatggacatcttcgaggcggggacgagaaaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 acaaaagccttgatttatttatgaaattcgatggacatcttcgaggcggggacgagaaaa 622
Query: 425 ctcactcaagagcaagtccttgttgccacacagtgaatggctgctttcaaacactggccc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ctcactcaagagcaagtccttgttgccacacagtgaatggctgctttcaaacactggccc 682
Query: 485 cccaaacgccctctcggctctgctaagagtctctcctcattagtgcttcttccagaatgc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 cccaaacgccctctcggctctgctaagagtctctcctcattagtgcttcttccagaatgc 742
Query: 545 tgcagcttccaacaatcaaattcacatcacggccagggcacgtaattaaattctacaggc 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tgcagcttccaacaatcaaattcacatcacggccagggcacgtaattaaattctacaggc 802
Query: 605 atcggag 611
|||||||
Sbjct: 803 atcggag 809
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1009
Length adjustment: 10
Effective length of query: 601
Effective length of database: 999
Effective search space: 600399
Effective search space used: 600399
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no535_l22.g1 MSMg01no535_l22.g1 CHROMAT_FILE:
MSMg01no535_l22.g1 PHD_FILE: MSMg01no535_l22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:39 2005
(577 letters)
>mm_chr6_112935421_112936396
Length = 976
Score = 812 bits (420), Expect = 0.0
Identities = 432/436 (99%), Gaps = 1/436 (0%)
Strand = Plus / Minus
Query: 1 attatcagttaataaatgcattttgttcgatagaaagtgtttcaaagcgtagtctttgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 attatcagttaataaatgcattttgttcgatagaaagtgtttcaaagcgtagtctttgtg 376
Query: 61 aagtgaggaaaaaataagatgttttattttggtggaaccactgggaatcaatgagagggg 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aagtgagg-aaaaataagatgttttattttggtggaaccactgggaatcaatgagagggg 317
Query: 121 tgttcttactggatgagaagattgaggagggcagagagcagaggaggcttcctggggagc 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 316 tgttcttactggatgagaagattgaggagggcagagagtagaggaggcttcctggggagc 257
Query: 181 agagaagatgagtctcccctaagtagggtttggggcacaaacgggacttatttattcagt 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 256 agagaagatgagtctcccctaagtagggtttggggcacagacgggacttatttattcagt 197
Query: 241 ggctctcagagagtgctctggatcaacagcaccagttccttctgggaacttgctaaaaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 ggctctcagagagtgctctggatcaacagcaccagttccttctgggaacttgctaaaaat 137
Query: 301 gcagactcccaggctttgcctacagatcagccactctggggacaaggcatagccatctgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 gcagactcccaggctttgcctacagatcagccactctggggacaaggcatagccatctgg 77
Query: 361 attgtaagaggctttggagggggaaatctcacgctcacacagactgccaccattgtctcc 420
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 76 attgtaagaggctttggagggggaaatctcacgctcacacagactgccacaattgtctcc 17
Query: 421 caagttcgagatgcta 436
||||||||||||||||
Sbjct: 16 caagttcgagatgcta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 976
Length adjustment: 10
Effective length of query: 567
Effective length of database: 966
Effective search space: 547722
Effective search space used: 547722
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
