BAC Information

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BAC

Clone NameMSMg01-536C16
Chromosome6 (Build37)
Map Location 38,486,343 - 38,486,919
singlet/doubletsinglet
Overlap gene1110001J03Rik
Upstream geneAkr1d1, LOC665046, Ybx1-ps2, LOC100039636, LOC665102, Trim24, Svopl, Atp6v0a4, LOC100039657, D630002J15Rik, D630045J12Rik, LOC665125, Zc3hav1l, Zc3hav1, Rpl30-ps1, Ttc26, D130059P03Rik, 3110054G05Rik
Downstream geneLOC621228, Luc7l2, Klrg2, LOC665180, Hipk2, Tbxas1, 1700025N23Rik, Parp12, 4930599N23Rik, A630082K20Rik, Slc37a3, Rab19, Mkrn1, ENSMUSG00000068601, Dennd2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-536C16.T7 (MSMg01no536_c16.b1)MSMg01-536C16.TJ (MSMg01no536_c16.g1)
ACCAG603446AG603447
length777800
length of high quality
(start - end)		624 (47 - 670)527 (79 - 605)
definitionCHROMAT_FILE: MSMg01no536_c16.b1 PHD_FILE: MSMg01no536_c16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:11 2005CHROMAT_FILE: MSMg01no536_c16.g1 PHD_FILE: MSMg01no536_c16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGGTGTCTGCCCACCTATGCTTCAGGGGTCAACAGTGTGGATCG
CCATGCCTGGCCCAGCCCTAGAATTCTGAGCATGAATTTATGGTATTTTC
CTGAGGAATTTCTTTTGTTGTTACTATTTTGTTTTGTTTTTTTCTAGATA
GGGTTTCACTATGGAGCTCTGGCTGTCCTGGAATTCAACTCTAGACTAGG
CTGGGCTCAAAGTCTGAGATATGACTACCATTACCTCCCAAATGCTTTTT
GTGAGGAACTTCAAAACCTTTACTACAAAGTCCCTTCAAGGACAATAATG
TTACCTCTATAAGGTACAATTGCAGTCATATATACCTACCTACTTATCTT
CCCCTCTTTGAAACTGTTGGGTTTGCCTTAATTATGCTTTCTTTAAATTT
TTAGTTATGTTTTCTTTCCCTGTACCCTTACTTTTCCTAACCTCTATTCA
CTTGCCAATTCCAGATGCCTAATTATAGCCTACTAGACTTTCTGAAGCAC
CTCTTCATACCACTGTCCCCTGGTTATCTATACCCTTAGCACTTATTTAT
GCTAAACATGATCTTATTTTATGGCTCTTCAGGGAGACTGTAGCTTCTTA
CATGTATATCTTTTGGGNNTGTTTTTTGTTTTTGNTTGCTTGTTCTTTCC
CACAGTCAAGGATACTCTATATAGTCCTGACTGTCCTGGAACTCCCTATG
TAAACCAGATTGGCCTCAAACTCAGAN

NCCAATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCGTTCTGGTTCTGTAAAACTGG
TTAAAAGCCCATGACTCTAAAAGTCGCTTAGCCTCGAAGAGAAGCTACTG
CTGCTGCTTTTGTACAGGGTGTGATGTACCTCTCAAATCGCCTTTGAAAT
GTTTATACACATAGATTAGATTAGGGAAGAGAGTAGCAGAGAAGGTGAGA
GGAAAGGGTGGAGTGTTGACGAATGCTACCCTCTGGGTATCTTGAGTTCC
CCTGAATGCTCCAATCCCAGTACAGAGTAGGGGATGCTCACAAAGCTCTG
CCCTTCCTTCAGAATTTATGGACAGTTGATGGCTGCTGGGGAGGAGGGGC
CTAGGAGGCTTCACCTAGGGAAATAGAAGCAGTCAATAGCTGCTGTTGGA
AGAGAGGGGCATTTCTGTTAGTGGTTATAAGTCCACTGGGAAGTTGCCCA
TGTTCCTATAAATGACCCCTCATCCTTGCCTTTATAAGTAACCCTGATTA
AGCTCCCTCACACACACACACACACACACACACACACACACACACACACA
CACACTCTCAAACACACTAAAAAAAGGAAGGAGATGAGTGAGGAGACAAG
AAAGTGTAATGTAAGGCAAATACCATCAAAATATATGTGTGTATGTGAAA
ATGTCATAAACAAAACAATTATGGCTAACTAATATTTATACCAGTAAAAA
CTTTAATAAAAGAGAGAATCTCAAAACCGGTTTAAAGAAATTTCAGTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no536_c16.b1 MSMg01no536_c16.b1 CHROMAT_FILE:
MSMg01no536_c16.b1 PHD_FILE: MSMg01no536_c16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:11 2005
         (624 letters)



>mm_chr6_38485893_38486919
          Length = 1027

 Score = 1046 bits (541), Expect = 0.0
 Identities = 564/577 (97%), Gaps = 10/577 (1%)
 Strand = Plus / Minus

                                                                        
Query: 55   ccatgcctggcccagccctagaattctgagcatgaatttatggtattttcctgaggaatt 114
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1027 ccatgcctggcccagccctagaattctgagcatgaatttatggtattttcctgaggaatt 968

                                                                        
Query: 115  tcttttgttgttactattttgttttgttt-------ttttctagatagggtttcactatg 167
            |||||||||||||||||||||||||||||       ||||||||||||||||||||||||
Sbjct: 967  tcttttgttgttactattttgttttgttttgttttgttttctagatagggtttcactatg 908

                                                                        
Query: 168  gagctctggctgtcctggaattcaactctagactaggctgggctcaaagtctgagatatg 227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907  gagctctggctgtcctggaattcaactctagactaggctgggctcaaagtctgagatatg 848

                                                                        
Query: 228  actaccattacctcccaaatgctttttgtgaggaacttcaaaacctttactacaaagtcc 287
            |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 847  actaccattacctcccaaattctttttgtgaggaacttcaaaacctttactacaaagtac 788

                                                                        
Query: 288  cttcaaggacaataatgttacctctataaggtacaattgcagtcatatatacctacctac 347
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 787  cttcaaggacaataatgttacctctataaggtacaatagcagtcatatatacctacctac 728

                                                                        
Query: 348  ttatcttcccctctttgaaactgttgggtttgccttaattatgctttctttaaattttta 407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727  ttatcttcccctctttgaaactgttgggtttgccttaattatgctttctttaaattttta 668

                                                                        
Query: 408  gttatgttttctttccctgtacccttacttttcctaacctctattcacttgccaattcca 467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667  gttatgttttctttccctgtacccttacttttcctaacctctattcacttgccaattcca 608

                                                                        
Query: 468  gatgcctaattatagcctactagactttctgaagcacc---tcttcataccactgtcccc 524
            ||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||
Sbjct: 607  gatgcctaattatagcctactagactttctgaagcacctcttcttcataccactgtcccc 548

                                                                        
Query: 525  tggttatctatacccttagcacttatttatgctaaacatgatcttattttatggctcttc 584
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547  tggttatctatacccttagcacttatttatgctaaacatgatcttattttatggctcttc 488

                                                 
Query: 585  agggagactgtagcttcttacatgtatatcttttggg 621
            |||||||||||||||||||||||||||||||||||||
Sbjct: 487  agggagactgtagcttcttacatgtatatcttttggg 451


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1027
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1017
Effective search space:   624438
Effective search space used:   624438
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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