NTTCTCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCATCTGGTTCTCGAGGGTTTTTGTTTGTTTGTTTGTTAA
AGCTGGAAGATATTACAATTTTATTTTTATCAGTTGTGGTTAGATTGTCT
CTTCTTGGTTTAATTTTGGTGCTATGACTAAATCTAGAAATTGATCCATT
TCTTTTTGATTTTCTAGCTCAGCAATTGTCTTAGGGTTTCTATTCCTGGA
CAAAACATCATGACCAAAAAGCAAGTTGGGGAGGAAAGGGTTTATTCAGC
TTACACTTCCATACTGCTGTTCATCACCAAAGGAAGTCAGGACTGGAACT
CAAGCAGGTCAGAAAGCAGGAGATGATGCAAAGGCCATGGAGAGATGTTT
CTTAGTGGATTGCTTCTCCTGGCTTGCTCACCGTGCTCTCTTATAAAGCC
AAGATTACCAGCCCCAGAGATGGTCCCACCCACAAGGGACCTTTCCCCCT
TGGTCACTAATTGAGAAAATGCCTTACAGTTGGATCTCATGGAGGCATTT
CCTAAACTGAAGCTCCTTTTTCTGTGATAACTCCAGCTGTATCAAGTTGA
CACAAAACTAGCCAGTACAGCAATATAAAGATTTTAGAGAATTCCCCTTC
TGTAGGAGGACCAGCAGTCTTAATTAATCTTGACCCCTGAGAGCTTTCAA
ACACTGGGGCACCAAACAGACAGCATTTACCAGCTGATATGAGAGGCCCC
TAACACACATACA

AAAGGAACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAGTACTAAAAATACCT
CCTTTGTATGAAGAGGCATTCCAGGAAACCCAGGCACTTTCTGGGCAGGT
TTTTATGGGGAAGGTGGGAGAAGAGGAAAGGGAATGTGGAAGTCAATGTC
AGCAAGGCTTTCTGACATTCTAGAGGTAGAAGATGTGGGGGTTTTGATCT
CCCCAGACAAGGTCATAGAAAGAGAATCCCAGCTGGTCAAGGGAGTCCTA
CATTTTGCACTATGCTCAAGAAAGCTGTCTGGATAGTAGAGACTTTGACC
CTAATTAACAGGGTTTACCCACATATTTTCATTTTCTAGTTATTGTGAAT
GTTCTTTTTCTTGTTTTTAATACACCTCTCCCCAATTCTCCTAAACCTTA
TACTATTTCCTTGCTGTTTTCCTACCTCTCCCCTAATAGTTCCCTTCCTG
TTCTCAAGAATACTTTAAAAATTATACAGGAACATCTATCATAAACACAC
AAAATCTACTTTTCTGAACAATTTGTCTTCTGTAGAAAACTTGACCATAC
CCCAGACCATTTCTTTTAATCATGTTCCAATAATTTACACATTACTAATA
ATAATGGGGATTATTACAATTTATTGAATGCGCATTCATAACCCTAAAAT
TTGCCCCCCTCCGGGAAGTATTATTTCTCCTCCCTCTGTCGTATCCCTCT
CTTGTTGTGCCCGCCC

Query= MSMg01no536_k06.g1 MSMg01no536_k06.g1 CHROMAT_FILE:
MSMg01no536_k06.g1 PHD_FILE: MSMg01no536_k06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:48 2005
         (500 letters)



>mm_chr6_109603026_109603925
          Length = 900

 Score =  928 bits (480), Expect = 0.0
 Identities = 495/500 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagtactaaaaatacctcctttgtatgaagaggcattccaggaaacccaggcactttct 60
           |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 201 aaagtactaaaaatacctcctttgtatggagaggcattccaggaatcccaggcactttct 260

                                                                       
Query: 61  gggcaggtttttatggggaaggtgggagaagaggaaagggaatgtggaagtcaatgtcag 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggcaagtttttatggggaaggtgggagaagaggaaagggaatgtggaagtcaatgtcag 320

                                                                       
Query: 121 caaggctttctgacattctagaggtagaagatgtgggggttttgatctccccagacaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaggctttctgacattctagaggtagaagatgtgggggttttgatctccccagacaagg 380

                                                                       
Query: 181 tcatagaaagagaatcccagctggtcaagggagtcctacattttgcactatgctcaagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcatagaaagagaatcccagctggtcaagggagtcctacattttgcactatgctcaagaa 440

                                                                       
Query: 241 agctgtctggatagtagagactttgaccctaattaacagggtttacccacatattttcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agctgtctggatagtagagactttgaccctaattaacagggtttacccacatattttcat 500

                                                                       
Query: 301 tttctagttattgtgaatgttctttttcttgtttttaatacacctctccccaattctcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttctagttattgtgaatgttctttttcttgtttttaatacacctctccccaattctcct 560

                                                                       
Query: 361 aaaccttatactatttccttgctgttttcctacctctcccctaatagttcccttcctgtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaccttatactatttccttgctgttttcctacctctcccctaatagttcccttcctgtt 620

                                                                       
Query: 421 ctcaagaatactttaaaaattatacaggaacatctatcataaacacacaaaatctacttt 480
           ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctcaagaataccttaaaaattagacaggaacatctatcataaacacacaaaatctacttt 680

                               
Query: 481 tctgaacaatttgtcttctg 500
           ||||||||||||||||||||
Sbjct: 681 tctgaacaatttgtcttctg 700


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space:   436100
Effective search space used:   436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)