Query= MSMg01no537_h03.b1 MSMg01no537_h03.b1 CHROMAT_FILE:
MSMg01no537_h03.b1 PHD_FILE: MSMg01no537_h03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:49 2005
(556 letters)
>mm_chr6_120936578_120937533
Length = 956
Score = 1033 bits (534), Expect = 0.0
Identities = 552/560 (98%), Gaps = 4/560 (0%)
Strand = Plus / Plus
Query: 1 acaaagtgagaccctgtctcacatagaagtgggtagagggttaaggcaaaagccttaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaaagtgagaccctgtctcacatagaagtgggtagagggttaaggcaaaagccttaatg 260
Query: 61 cagcccagctggaagagcgactgcctagcaacccccagcagcacaaacatcaggtattgt 120
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 cagctcagctggaagagcgactgcctagcaacccccagcagcacaaacatcaggtattat 320
Query: 121 agcagatcagaaattcaaggtcattcttggctgtataaggaattcaggctggcctggact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcagatcagaaattcaaggtcattcttggctgtataaggaattcaggctggcctggact 380
Query: 181 agagactctgccacaaaaatcaaccaaccaaccagccacccacccataaacagaaagagg 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agagactctgccacaaaaattaaccaaccaaccagccacccacccataaacagaaagagg 440
Query: 241 agggagtcagccctgcctctgccctctggcccaccagcacccactcacatagagctctgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agggagtcagccctgcctctgccctctggcccaccagcacccactcacatagagctctgg 500
Query: 301 ctcaccccagctttcagtgacaagggactacttagacagagaatcccaaggactggggtc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctcaccccagctttcagtgacaagggactacttagacagagaatcccaaggactggggtc 560
Query: 361 ccacagaggctcagctttcccaaagggaaggtgacgtccagtgtgcccgc----acattt 416
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 561 ccacagaggctcagctttcccaaagggaaggtgacgtccagtgtgcccgcccgcacattt 620
Query: 417 gcaacccacagtgttaaagcactgtggcaaacacaatgccagtgaaattaagattaatat 476
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcaatccacagtgttaaagcactgtggcaaacacaatgccagtgaaattaagattaatat 680
Query: 477 ccccgactctctgtcctgaccaaggagctagcagacagacagacagggaaggaagaagcg 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccccgactctctgtcctgaccaaggagctagcagacagacagacagggaaggaagaagcg 740
Query: 537 gagtggtacaggccttcgtg 556
||||||||||||||||||||
Sbjct: 741 gagtggtacaggccttcgtg 760
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space: 516516
Effective search space used: 516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no537_h03.g1 MSMg01no537_h03.g1 CHROMAT_FILE:
MSMg01no537_h03.g1 PHD_FILE: MSMg01no537_h03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:49 2005
(637 letters)
>mm_chr6_121114423_121115459
Length = 1037
Score = 1178 bits (609), Expect = 0.0
Identities = 630/637 (98%)
Strand = Plus / Minus
Query: 1 catgggctggtgatggtgtgaggaacagagttttggtttttctgaagaaaatagttctgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 catgggctggtgatggtgtgaggaacagagttttggtttttctgaagaaaatagttctgt 728
Query: 61 gaaggatggggatgatgataacactggtcatggtaggaacacttttgtgtgtgtatgagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 gaaggatggggatgatgataacactggtcatggtaggaacacttttgtgtgtgtatgagg 668
Query: 121 agtcgagagcagaatcctactgggttgcccaaactcaatttgagctcactgtgtagttca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 agtcgagagcagaatcctactgggttgcccaaactcaatttgagctcactgtgtagttca 608
Query: 181 ggctggccttgaacttgtgaccctcccacctttgtctcccaagtactaactattagcatc 240
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 607 ggttggccttgaacttgtgaccctcccacctctgtctcccaagtactaactattagcatc 548
Query: 241 cagctccccagtttttaccccagcatccagcttacatatgaacccaagttctttggaaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 cagctccccagtttttaccccagcatccagcttacatatgaacccaagttctttggaaaa 488
Query: 301 atagcaagcactttgtctgtgtctccattctctccaccccgcccccacacacttgccatt 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 487 atagcaagcactttgtctgtgtcgccattctctccaccccgcccccacacacttgccatt 428
Query: 361 ttttttattagatattttcttcatctccatttcaattgctatcccaaagtcttctatacc 420
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 427 ttttttattagatattttcttcatctccatttcaattgctatcccaaagtctcctatacc 368
Query: 421 ctcccccaggcctgctcctctacacacccactcccacttcttggccctggcattccccta 480
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 367 ctcccccagccctgctcctctacacacccactcccacttcttggccctggcgttccccta 308
Query: 481 tactggggcatatgaagtttgctaggccaaggggcctctcttctcaatgatggccaacta 540
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 307 tactggggcatatgaagtttgctagaccaaggggcctctcttctcaatgatggccaacta 248
Query: 541 agccatcttctgctatgtatgcagctagagacacgagctctgggggtactggttagttca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 agccatcttctgctatgtatgcagctagagacacgagctctgggggtactggttagttca 188
Query: 601 tattgatgttctgcctatagggttgcagaccccttca 637
|||||||||||||||||||||||||||||||||||||
Sbjct: 187 tattgatgttctgcctatagggttgcagaccccttca 151
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space: 643929
Effective search space used: 643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
