Query= MSMg01no537_m20.b1 MSMg01no537_m20.b1 CHROMAT_FILE:
MSMg01no537_m20.b1 PHD_FILE: MSMg01no537_m20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:16 2005
(639 letters)
>mm_chr6_97938218_97939256
Length = 1039
Score = 1183 bits (612), Expect = 0.0
Identities = 630/636 (99%)
Strand = Plus / Plus
Query: 4 ggaattcttcgtggttttgttcaaattcacagtagcaaatggtggggggtagaagaggag 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttcgtggttttgttcaaattcacagtagcaaatggtggggggtagaagaggag 263
Query: 64 ccatgtctgttcaaatgagctgtatgtacagtagtgagcctgggagtcagagagcatgat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ccatgtctgttcaaatgagctgtatgtacagtagtgagcctgggagtcagagagcatgat 323
Query: 124 ggtatctgtggccaccatcttacactgactggcgatgggccacagagggaactaggctgt 183
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 324 ggtatctgtggccaccatcttacactgactggagatgggccacagagggaactaggctgt 383
Query: 184 cagtgtcaccagggagtggcagagctgccctgtggtagtcaggaaggcatctagtccatc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cagtgtcaccagggagtggcagagctgccctgtggtagtcaggaaggcatctagtccatc 443
Query: 244 tctgcaatcaggttgtgatcgtaataaagaaggcaggagcatgggagaggaaccagaaca 303
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tctgcaatcagtttgtgatcgtaataaagaaggcaggagcatgggagaggaaccagaaca 503
Query: 304 agtgcgcgtgagacccccatggactttgatgtggacagctaatgtgagatacaaacgatg 363
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 504 agtgcgcgtgagacccccatggactttgatgtggacggctaatgtgagatacaaacgatg 563
Query: 364 tcagtaaatacagtaccatggtaaatgtgtagaatattgtagccttgtctcgtgatttgg 423
||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 564 tcagtaaatacagtaccgtggtaaatgtgtagaatattgtcgccttgtcttgtgatttgg 623
Query: 424 actgcaaatgctcacacacactcaatttttggacaaccttttatttatctgggcttttcc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 actgcaaatgctcacacacactcaatttttggacaaccttttatttatctgggcttttcc 683
Query: 484 tttagagccctataagggtgggtgtgggagtgagaacagagtagcatctttctccagcat 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tttagagccctataagggtgggtgtgggagtgagaacagagtagcatctttctccagcat 743
Query: 544 cttcaggatgagaagagcaggccattcagggttagacctgttcacagtggcatgcaatcc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 cttcaggatgagaagagcaggccattcagggttagacctgttcacagtggcatgcaatcc 803
Query: 604 agccatgatggtgctaccatgctctacatcagtggt 639
||||||||||||||||||||||||||||||||||||
Sbjct: 804 agccatgatggtgctaccatgctctacatcagtggt 839
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space: 647241
Effective search space used: 647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no537_m20.g1 MSMg01no537_m20.g1 CHROMAT_FILE:
MSMg01no537_m20.g1 PHD_FILE: MSMg01no537_m20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:16 2005
(582 letters)
>mm_chr6_98118286_98119269
Length = 984
Score = 1036 bits (536), Expect = 0.0
Identities = 572/584 (97%), Gaps = 2/584 (0%)
Strand = Plus / Minus
Query: 1 tctgcttggccttcaaccccatgtcagtcccaaagcatagccaaggattgca-ttctttt 59
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 784 tctgcttggccttcaaccccatgtcagtcccaaagcatagccaaggattgcatttttttt 725
Query: 60 cttagataattagatacttaaacaaaagggcaacctttcaaataagtttctgaggaccaa 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 cttagataattagatacttaaacaaaagggcaacctttcaaataagtttctgaggaccaa 665
Query: 120 aatatcctaaaaaaggcagaacacagaaaaatcacttaatcatataaaaatcccatttca 179
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 664 aatatcctaaaaaaggcagaacacagaaaagtcacttaatcatataaaaatcccatttca 605
Query: 180 atcattaaagtgctatcctgtatccattacaaaattacctttaaaattatgaaatgttta 239
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 604 atcattaaagtgctatcctgtatccattacaaaattacctttaaaactatgaaatgttta 545
Query: 240 aattagatagctggttttctgctccaagattttcagagataatattgagaatatacag-a 298
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct: 544 aattagatagctggttttctgctccaagatttgcagagataatattgagaatatacagaa 485
Query: 299 aaaaatctgaatagtatttcttatatacacttaaacttgaaattcatttttacattcctt 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 aaaaatctgaatagtatttcttatatacacttaaacttgaaattcatttttacattcctt 425
Query: 359 gctgactagtatatgttggtcaagttcctcaaaaactcaaactgtagtcacatgtggtat 418
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 424 gctgactagtatatgttggtcaagttcctcaaaaactcaagctatagtcacatgtggtat 365
Query: 419 aatgtagtttaagcaccacaccccataaattcattggtcatccataagattctgttatct 478
||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 364 aatgtagtttaagtaccacaccccataaattcattgttcagccataagattctgttatct 305
Query: 479 agtgatatctgtatatgtcctagtttttgttagtacaagctaatgctcacagatataatg 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 agtgatatctgtatatgtcctagtttttgttagtacaagctaatgctcacagatataatg 245
Query: 539 cttttggactgttgagatgaagttatttgtcatcctcagtcttg 582
||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 cttgtggactgttgagatgaagttatttgtcatcctcagtcttg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 984
Length adjustment: 10
Effective length of query: 572
Effective length of database: 974
Effective search space: 557128
Effective search space used: 557128
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
