Query= MSMg01no538_c02.b1 MSMg01no538_c02.b1 CHROMAT_FILE:
MSMg01no538_c02.b1 PHD_FILE: MSMg01no538_c02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:42 2005
(488 letters)
>mm_chr6_106120708_106121595
Length = 888
Score = 905 bits (468), Expect = 0.0
Identities = 480/484 (99%)
Strand = Plus / Minus
Query: 5 gaattcctcatggagcagtagttacctgtgtattagttttaagtgatataatctttaaaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 gaattcctcatggagcagtagttacctgtgtattagttttaagtgatataatctttaaaa 629
Query: 65 taacacttaaagtaggcagcatacagctttcattttgcaggctatctaaactattccttg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 taacacttaaagtaggcagcatacagctttcattttgcaggctatctaaactattccttg 569
Query: 125 ttagtcttatgagtaagacaataattgtacctacatatttttcttcctaagatcattgag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ttagtcttatgagtaagacaataattgtacctacatatttttcttcctaagatcattgag 509
Query: 185 gtgtatttcacatagtgatacaggcaagagacatacagaatacttcattcccacccagat 244
||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gtgcattttacatagtgatacaggcaagagacatacagaatacttcattcccacccagac 449
Query: 245 gtgaaccctaaagttttacttcttgggtatttaacaactcttaaatttccccaaataggg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gtgaaccctaaagttttacttcttgggtatttaacaactcttaaatttccccaaataggg 389
Query: 305 atgtagagccaatttttgaatataaaaactgagccttttttcttgcattcttattgcata 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 atgtagagccaatttttgaatataaaaactgagccttttttcttgcattcttattgcata 329
Query: 365 cttcattctttcattagtgtgtcagccctatattgttgtatgctcattacaataaaaata 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 cttcattctttcattagtgtgtcagccctatattgttgtatgctcattacaataaaaata 269
Query: 425 ataagaataaataatagcccaggaaagaaaaatgcctggcacctctccattcctcctctc 484
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 268 ataagaataaataatagcccaggaaagaaaaatgcctggcacctctccattccttctctc 209
Query: 485 cctc 488
||||
Sbjct: 208 cctc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space: 419684
Effective search space used: 419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no538_c02.g1 MSMg01no538_c02.g1 CHROMAT_FILE:
MSMg01no538_c02.g1 PHD_FILE: MSMg01no538_c02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:43 2005
(456 letters)
>mm_chr6_105956786_105957641
Length = 856
Score = 859 bits (444), Expect = 0.0
Identities = 455/460 (98%), Gaps = 4/460 (0%)
Strand = Plus / Plus
Query: 1 agtctatccagtagtgcaggccaccagaggctcaaagacagtcacttctgtgatttccct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtctatccagtagtgcaggccaccagaggctcaaagacagtcacttctgtgatttccct 260
Query: 61 gacccattctccacaccttgctgtttctgtctccagcagcctttatcaatcacactggat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacccattctccacaccttgctgtttctgtctccagcagcctttatcaatcacactggat 320
Query: 121 ccttccaaactcatttcttctcccttaggtcatggtttatatttgttcttactctgattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccttccaaactcatttcttctcccttaggtcatggtttatatttgttcttactctgattt 380
Query: 181 tttttcatatagttatgtgagacaatttaagatcacatatctcgtttcatttttgttaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttttcatatagttatgtgagacaatttaagatcacatatctcgtttcatttttgttaaa 440
Query: 241 atcagtgcacgttcttcaaatatttcttattatttttcttctccggcttttcatgccata 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcactgcacgttcttcaaatatttcttattatttttcttctccggcttttcatgccata 500
Query: 301 catttcattggtcctttccttgtttactcacaca--gacacacacagacacacacagaca 358
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 501 catttcattggtcctttccttgtttactcacacacagacacacacagacacacacagaca 560
Query: 359 cacaca--cacacacacacacacacacgcacgcacgcgcacacacacacacacacacaca 416
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacacagacacacacacacacacacacgcacgcacgcgcacacacacacacacacacaca 620
Query: 417 cacacgagagagagagagagagagagagagagagagagag 456
||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cacacgagagagagagagagagagagagagagagagagag 660
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 108
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space: 377316
Effective search space used: 377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
