BAC Information

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BAC

Clone NameMSMg01-538F11
Chromosome6 (Build37)
Map Location 18,587,492 - 18,588,146
singlet/doubletsinglet
Overlap genenone
Upstream geneCapza2, St7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2
Downstream geneEG545829, Lsm8, Ankrd7, LOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-538F11.T7 (MSMg01no538_f11.b1)MSMg01-538F11.TJ (MSMg01no538_f11.g1)
ACCAG605093AG605094
length722710
length of high quality
(start - end)		667 (43 - 709)---
definitionCHROMAT_FILE: MSMg01no538_f11.b1 PHD_FILE: MSMg01no538_f11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:58 2005CHROMAT_FILE: MSMg01no538_f11.g1 PHD_FILE: MSMg01no538_f11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCCAACATAACAAGGAATTGTGTTGACTAGCATAAGCATTATTCATACT
CTATAGTCCTACTAAGAAAAGATCAATGAAAGGCAAATTTAATCTGTAGT
GCTAAGCCAGGATCAAACAGTGATTTTCTTTGAATAGCTGTGTATGGAAA
ATTGACAGGGACAAAAAACTTTGGAAAAGGTTAAAGAATTATTTTACATC
TTTATCTGAGCAATTGTCATCTGAGTATGTCAATATATTACAGACCTTGG
GTTAGCAACAGCCATGGGAAACAGGCATCAAGAAGAGGAGGGAAAGAACT
CAGAAATTCAAAGAGCAAGAAACCAAGCACTAGGAATGGTTTAGCAATCT
ATAAGTTTGCCTTTGGCTAGGAGCCAAGCCCATCTCCTGAGAATGACTGT
GACAATTGAAAGCCAGTCCAACTTCTGGACCCATTTGTCAGTTGCTCAGG
TCACTGCTAGAACTGAGAAGAATGAAGATGAATGCTATAGAAGAAATAAA
GAAAACAGCCAGAGATTAAAAAAAAAAAAGTAAGAAAATCTGAGATCACA
GAAAAGAAATAAAGAGTACCTGCCCCTACCCCCTTCATACTACTAAATGA
TGAGCCTTAATTTTGTTGTTGTTTTTGTTTTTGGCATTTGGAGTCAGGAT
ATAATATAATCCAGGTTGTCCN

NGTCTCTTTTNNCCCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTAATTGACTCCGNCGNGAAAATTCCNTA
AAANTTTTATTGGTAAATTTNTCNNCAGNCCCCCCTTTTTAAAAAAAAGG
GGTTGGTTAAAAAAATAAAAGGGGGGGGGTTTTTTTCCCCTTTTGGGGGG
AAAAAAAACCCNCCTTTTTCCCAAATTGGGGGTGGGTTTTTAAAATGGGG
GGGGGGCCTCTTAAAAAATTTTTGGTAAACCCTCCAAAAAAAAANNNNNA
AAAAATTTTTTTTTTATAAATAAAAGNNANNAGNTAAAAAAAAAAAAAAA
ATAACCCCCCCCTGGGGGGGGGGGGGCGCCCTTTTTTNTTTTTGGGGAAA
ACCCCCNAAAAATTTTTAAACCCAAATGGGAGGGGGGAGAAAAAAACCCC
ANTTTCCCCCCTTTTTTTTTGAGGGGGTTNTAAAAACCCCGGGGGTGGGG
GGGAGNAACAACAACACCCTTTTTTTATTTTTTTTNTTNTTGTTTTTTTT
TTTNTNTTTTTNCCTTTCATTTTNCTCTTTTCTGTGGGGGGGGNNNNTAA
GAGANTATANAAAATACNATAAATAAAAAATAATATTTTTGCTTTTTCCT
ATTATAGACTGTATTTTCTCTTACTTTTATAATTAATATAAAAACTAAAT
ATTTTTCACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no538_f11.b1 MSMg01no538_f11.b1 CHROMAT_FILE:
MSMg01no538_f11.b1 PHD_FILE: MSMg01no538_f11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:58 2005
         (667 letters)



>mm_chr6_18587287_18588346
          Length = 1060

 Score = 1168 bits (604), Expect = 0.0
 Identities = 645/662 (97%), Gaps = 7/662 (1%)
 Strand = Plus / Plus

                                                                       
Query: 6   aattcccaacataacaaggaattgtgttgactagcataagcattattcatactctatagt 65
           ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aattcccgacatagcaaggaattgtgttgactagcataagcattattcatactctatagt 265

                                                                       
Query: 66  cctactaagaaaagatcaatgaaaggcaaatttaatctgtagtgctaagccaggatcaaa 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cctactaagaaaagatcaatgaaaggcaaatttaatctgtagtgctaagccaggatcaaa 325

                                                                       
Query: 126 cagtgattttctttgaatagctgtgtatggaaaattgacagggacaaaaaactttggaaa 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 326 cagtgattttctttgaatagctgtgtatggaaaattgacagggacaaaaaattttggaaa 385

                                                                       
Query: 186 aggttaaagaattattttacatctttatctgagcaattgtcatctgagtatgtcaatata 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aggttaaagaattattttacatctttatctgagcaattgtcatctgagtatgtcaatata 445

                                                                       
Query: 246 ttacagaccttgggttagcaacagccatgggaaacaggcatcaagaagaggagggaaaga 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ttacagaccttgggttagcaacagccatgggaaacaggcatcaagaagaggagggaaaga 505

                                                                       
Query: 306 actcagaaattcaaagagcaagaaaccaagcactaggaatggtttagcaatctataagtt 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 506 actcagaaattcaaagagcaagaaaccaagcactaggaatggtttagcaatctataaatt 565

                                                                       
Query: 366 tgcctttggctaggagccaagcccatctcctgagaatgactgtgacaattgaaagccagt 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tgcctttggctaggagccaagcccatctcctgagaatgactgtgacaattgaaagccagt 625

                                                                       
Query: 426 ccaacttctggacccatttgtcagttgctcaggtcactgctagaactgagaagaatgaag 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 626 ccaacttctggacccatttgtcagttgctcaggtcactgctagaactgagaagaacgaag 685

                                                                       
Query: 486 atgaatgctatagaagaaataaagaaaacagccagagattaaaaaaaaaaaagtaagaaa 545
           |||||||||||| ||||||||||||||||||||||||||||||||| |||| |||| |||
Sbjct: 686 atgaatgctataaaagaaataaagaaaacagccagagattaaaaaagaaaa-gtaaaaaa 744

                                                                       
Query: 546 atctgagatcacagaaaagaaataaagagtacctgcccctacccccttcatactactaaa 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 atctgagatcacagaaaagaaataaagagtacctgcccctacccccttcatactactaaa 804

                                                                       
Query: 606 tgatgagccttaattttgttgttgtttttgtttttggcatttggagtcaggatataatat 665
           ||||||||||||||||||||      ||||||||||| ||||||||||||||||| ||||
Sbjct: 805 tgatgagccttaattttgtt------tttgtttttggtatttggagtcaggatatcatat 858

             
Query: 666 aa 667
           ||
Sbjct: 859 aa 860


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1060
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1050
Effective search space:   689850
Effective search space used:   689850
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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