Query= MSMg01no538_k08.b1 MSMg01no538_k08.b1 CHROMAT_FILE:
MSMg01no538_k08.b1 PHD_FILE: MSMg01no538_k08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:20 2005
(696 letters)
>mm_chr6_11494173_11495268
Length = 1096
Score = 1307 bits (676), Expect = 0.0
Identities = 688/692 (99%)
Strand = Plus / Plus
Query: 5 gaattctttgtgttaatgatattcagaatacagaacttggcatatggaggtagagagaga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgtgttaatgatattcagaatacagaacttggcatatggaggtagagagaga 264
Query: 65 tggaataccttgcagcagacattcttggagactgaaattgcccatgatcttgtcctatcc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tggaataccttgcagcagacattcttggagactgaaattgcccatgatcttgtcctatcc 324
Query: 125 cttatgttttcactaacagatctatgcttgatcataatcagtctgtgccaagagacaagg 184
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 325 cttatgttttcactaacagatctgtgcttgatcataatcagtctgtgccaagagacaagg 384
Query: 185 ttttcaaagggataaacaagtcagaatagccaaaaaaaggtcttagggttaaataatagc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttttcaaagggataaacaagtcagaatagccaaaaaaaggtcttagggttaaataatagc 444
Query: 245 tataacaagttttagatagtattttaaagtgctaattcccaactcattgtcttctccaaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tataacaagttttagatagtattttaaagtgctaattcccaactcattgtcttctccaaa 504
Query: 305 tagcttttatattcatactcattgaacaaagacttttgcatgaattgctgttcttgagtt 364
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 505 tagcttttatattcatactcatcgaacaaagacttttgcatgaattgctgttcttgagtt 564
Query: 365 tagccaagctcttttactaaagtaaaggctttagtagcagatatcaaaacatcatgtgat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tagccaagctcttttactaaagtaaaggctttagtagcagatatcaaaacatcatgtgat 624
Query: 425 tacgttttaatttagctcagggtagaattctatggtgtaaagtcaatgatccattgtgta 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tacgttttaatttagctcagggtagaattctatggtgtaaagtcaatgatccattgtgta 684
Query: 485 attcaatttgcaaactccttaattaatttatgtaaataatttaattatatttaatatagt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 attcaatttgcaaactccttaattaatttatgtaaataatttaattatatttaatatagt 744
Query: 545 agatacattcaagatgcaataggcttacaaataaaaatctcaggcaggattccaaaagta 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 agatacattcaagatgcaataggcttacaaataaaaatctcaggcaggattccaaaagta 804
Query: 605 cctgaggtgattttctaatacaatcatcatgtatttttaaaattgattttgttctattat 664
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 805 cctgaggtgattttctaagacaatcatcatgtattttaaaaattgattttgttctattat 864
Query: 665 tttgaagtatgtaacattaaatgacaaaaata 696
||||||||||||||||||||||||||||||||
Sbjct: 865 tttgaagtatgtaacattaaatgacaaaaata 896
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1096
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1086
Effective search space: 744996
Effective search space used: 744996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no538_k08.g1 MSMg01no538_k08.g1 CHROMAT_FILE:
MSMg01no538_k08.g1 PHD_FILE: MSMg01no538_k08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:21 2005
(651 letters)
>mm_chr6_11612549_11613599
Length = 1051
Score = 1054 bits (545), Expect = 0.0
Identities = 553/557 (99%), Gaps = 3/557 (0%)
Strand = Plus / Minus
Query: 98 caaacaaacgaacaaacaaaaaaacgcatggtattggtacagagacagagaggtccatca 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1051 caaacaaacgaacaaacaaaaaaacgcatggtattggtacagagacagagaggtccatca 992
Query: 158 atggaatagaattgaagacccagaaacgtatccacacccctatggacacttgatttttga 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 991 atggaatagaattgaagacccagaaacgtatccacacccctatggacacttgatttttga 932
Query: 218 caagccagaaaaatgtagtggaaaaaagaaagcatcttcaacaaatggtgctaatctaac 277
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931 caagccaaaaaaatgtagtggaaaaaagaaagcatcttcaacaaatggtgctaatctaac 872
Query: 278 tggaggtctgtgtgt---agaatgcaaattggtccagatatatgtcctgtacaaggctca 334
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 tggaggtctgtgtgtagaagaatgcaaattggtccagatatatgtcctgtacaaggctca 812
Query: 335 aatccaggtgaatcaaagacatctacataaaaccacatatactgaaacttatagaagagg 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 aatccaggtgaatcaaagacatctacataaaaccacatatactgaaacttatagaagagg 752
Query: 395 aagtgggaagtagcctcaaaaagttttgttgattgcatctttctgaagatttgttttatt 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 aagtgggaagtagcctcaaaaagttttgttgattgcatctttctgaagatttgttttatt 692
Query: 455 ttcttcatttttcatgttttgctttgttttaagaaatattgtcatgtacacatcacatag 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 ttcttcatttttcatgttttgctttgttttaagaaatattgtcatgtacacatcacatag 632
Query: 515 ctctgcttggttttaatagtactgggattacagacatgtgccactgtattcagttcatgt 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 ctctgcttggttttaatagtactgggattacagacatgtgccactgtattcagttcatgt 572
Query: 575 gtgctgaggaacaaacacaggtccctgttcatgttatacaagcattctaaagctgagcaa 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 gtgctgaggaacaaacacaggtccctgttcatgttatacaagcattctaaagctgagcaa 512
Query: 635 tacactaaaatattctc 651
|||||||||||||||||
Sbjct: 511 tacactaaaatattctc 495
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space: 667281
Effective search space used: 667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
