BAC Information

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BAC

Clone NameMSMg01-538M10
Chromosome6 (Build37)
Map Location 43,822,850 - 43,924,558
singlet/doubletdoublet
Overlap genenone
Upstream geneOlfr448, Olfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483, Olfr444, EG622841, Igk-V, Olfr443-ps1, GA_x5J8B7W6337-1183223-1183810, Olfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591, Olfr438, Olfr437, Olfr13, GA_x5J8B7W6337-1270568-1271367, Olfr435, Olfr434, LOC665745, Olfr47, Arhgef5, Nobox, Tpk1, LOC665747, LOC546897, LOC665779
Downstream geneLOC100040210
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-538M10.T7 (MSMg01no538_m10.b1)MSMg01-538M10.TJ (MSMg01no538_m10.g1)
ACCAG605424AG605425
length744745
length of high quality
(start - end)		707 (38 - 744)672 (68 - 739)
definitionCHROMAT_FILE: MSMg01no538_m10.b1 PHD_FILE: MSMg01no538_m10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:17:30 2005CHROMAT_FILE: MSMg01no538_m10.g1 PHD_FILE: MSMg01no538_m10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:17:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,822,850 - 43,823,551)(43,924,006 - 43,924,558)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTA
GGGTAAGATTCTACTTGCTTAGGATGTCCTACCCTTATATGTATAGTTGG
ATTCAATTTACGTTTCTATTTCTTTAAAAGCTTCCCCCTCCCCCAGAATC
GATGTCATGTGTTATACTATTCCTTTTGCAAAGTCTGCGTAATTTTGGTA
TCAGAATAGTACAGTCCTTGTCAAAACTTGAAAAACATCTTAATTTTCTA
AAAAAGTAAATATAAAGAGTTGGTTTTATGTCCTGTTCAAACATGTCATA
AATTTTACCAGTAAAATTATTTAGATCTGAAGTTTTGTTTGCAGGAAGGA
ATTTAACATGAATTTAATGTCTGCAGTGGACAGAATGTCTTGCAGAGCCA
ATTGAAAGAAGATTAGGAAGGTTTTCATTAAAGTTAGTTTAGAAAATACC
ATCTATACTGTGATCAAGCACGTACCTGCCCTCACCACTTAGAACCTCTA
CACTTACTGGAATTGATTTAATGATAATTTAAGAGTTAACAAACAGTCTC
AGAATGTCCTTGTGGCATGTTTGCAAGGAAACTAAATGACCCACAGGATT
TCAATGGCAAGTCCCCTCTGTAGTCATTTCCCCCAGCAAATAATCAATGA
GACAGTATTCTCATTTTATGCACTGGTTTCCAAAGCTTGCTTAATGTGAC
TGCCTCTGTCTGTGCTGACATCACAGACTGTAAGATTTGAACTN

ATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCAAATTTAAAGAAAGATAAAAAGAAACAATTTA
AAAGAGATATGAGCATTTCAGAAAAACAACAAAAAAGGTAATTACATCTC
TTTTTTTAGTAACCAACAGGGAACCTCCTTCAAAGATCAGCAGAGATGAA
AAGACCTTAATATCTTAACATTTTAATCTTATTGGCATTTATTGTAGGCT
GTGATCAGACCCTCCATATGCAGTCTTTCCTGTTTCTCACAGTAAATTTG
CTGGTAGAAGAGAAAAGGAAATTTCTAAAAGAACTTCAGGCTCATGTGGT
TTTTAGGCATTAATTCTATGAAACACTCAACGAAGTTCAATACAAGCATT
GTTGAGTTTAAGCAAGATGAGGGCTTGAGGAGGTGGCTCACAGGATAAAA
AGAGCACTTGCTATAAATGTGGAGGACTGGTGTCTGGATCCCTGGAACAC
ACATAAATGGCAGTCAAATGTGGGAGCCTACAATCACAACACTCTAGAGG
CAGAGGCCAGGTATCTCTAGGCATGCTGAGTAGATAAGCTTAGAACTGAC
ATGCTCTGGGTTCAGTAACTGACCCTGCCTCAGTAAGTAATGCATAGAGT
AATCCAGGAAAACACCTGCTATCAAGCGTACACCCACACACACACTCACA
TACAGACAGACACACACCTTTGCACATGTAAATATCATGTACTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no538_m10.b1 MSMg01no538_m10.b1 CHROMAT_FILE:
MSMg01no538_m10.b1 PHD_FILE: MSMg01no538_m10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:30 2005
         (707 letters)



>mm_chr6_43822646_43823752
          Length = 1107

 Score = 1319 bits (682), Expect = 0.0
 Identities = 697/702 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttagggtaagattctacttgcttaggatgtcctacccttatatgtatagttgga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttagggtaagattctacttgcttaggatgtcctacccttatatgtatagttgga 264

                                                                       
Query: 65  ttcaatttacgtttctatttctttaaaagcttccccctcccccagaatcgatgtcatgtg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttcaatttacgtttctatttctttaaaagcttccccctcccccagaatcgatgtcatgtg 324

                                                                       
Query: 125 ttatactattccttttgcaaagtctgcgtaattttggtatcagaatagtacagtccttgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 325 ttatactattccttttgcaaagtctgcgtaattttggtatcagaatagtgcagtccttgt 384

                                                                       
Query: 185 caaaacttgaaaaacatcttaattttctaaaaaagtaaatataaagagttggttttatgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 385 caaaacttgaaaaacatcttaattttctaaaaaagtaaatataaagagttggtcttatgt 444

                                                                       
Query: 245 cctgttcaaacatgtcataaattttaccagtaaaattatttagatctgaagttttgtttg 304
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 445 cctgttcaaacatgtcataaattttaccagtaaaattatctagatctgaagttttgttcg 504

                                                                       
Query: 305 caggaaggaatttaacatgaatttaatgtctgcagtggacagaatgtcttgcagagccaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 caggaaggaatttaacatgaatttaatgtctgcagtggacagaatgtcttgcagagccaa 564

                                                                       
Query: 365 ttgaaagaagattaggaaggttttcattaaagttagtttagaaaataccatctatactgt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 565 ttgaaagaagattaggaaggttttcattaaagttagtttagaaaataccatctataccgt 624

                                                                       
Query: 425 gatcaagcacgtacctgccctcaccacttagaacctctacacttactggaattgatttaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gatcaagcacgtacctgccctcaccacttagaacctctacacttactggaattgatttaa 684

                                                                       
Query: 485 tgataatttaagagttaacaaacagtctcagaatgtccttgtggcatgtttgcaaggaaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgataatttaagagttaacaaacagtctcagaatgtccttgtggcatgtttgcaaggaaa 744

                                                                       
Query: 545 ctaaatgacccacaggatttcaatggcaagtcccctctgtagtcatttcccccagcaaat 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctaaatgacccacaggatttcaatggcaagtcccctctgtagtcatttcccccagcaaat 804

                                                                       
Query: 605 aatcaatgagacagtattctcattttatgcactggtttccaaagcttgcttaatgtgact 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 aatcaatgagacagtattctcattttatgcactggtttccaaagcttgcttaatgtgact 864

                                                     
Query: 665 gcctctgtctgtgctgacatcacagactgtaagatttgaact 706
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 gcctctgtctgtgctgacatcacagactgtaagatttgaact 906


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 707
Length of database: 1107
Length adjustment: 10
Effective length of query: 697
Effective length of database: 1097
Effective search space:   764609
Effective search space used:   764609
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no538_m10.g1 MSMg01no538_m10.g1 CHROMAT_FILE:
MSMg01no538_m10.g1 PHD_FILE: MSMg01no538_m10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:30 2005
         (672 letters)



>mm_chr6_43924006_43925077
          Length = 1072

 Score = 1046 bits (541), Expect = 0.0
 Identities = 550/553 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatttaaagaaagataaaaagaaacaatttaaaagagatatgagcatttcagaaaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 caaatttaaagaaagataaaaagaaacaatttaaaagagatatgagcatttcagaaaaac 494

                                                                       
Query: 61  aacaaaaaaggtaattacatctctttttttagtaaccaacagggaacctccttcaaagat 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 493 aacaaaaaaggtaattacatctctttttttagtaaccaacaaggaacctccttcaaagat 434

                                                                       
Query: 121 cagcagagatgaaaagaccttaatatcttaacattttaatcttattggcatttattgtag 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 433 cagcagagatgaaaagaccttaatatcttaacattttaatcttagtggcatttattgtag 374

                                                                       
Query: 181 gctgtgatcagaccctccatatgcagtctttcctgtttctcacagtaaatttgctggtag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gctgtgatcagaccctccatatgcagtctttcctgtttctcacagtaaatttgctggtag 314

                                                                       
Query: 241 aagagaaaaggaaatttctaaaagaacttcaggctcatgtggtttttaggcattaattct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 aagagaaaaggaaatttctaaaagaacttcaggctcatgtggtttttaggcattaattct 254

                                                                       
Query: 301 atgaaacactcaacgaagttcaatacaagcattgttgagtttaagcaagatgagggcttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 atgaaacactcaacgaagttcaatacaagcattgttgagtttaagcaagatgagggcttg 194

                                                                       
Query: 361 aggaggtggctcacaggataaaaagagcacttgctataaatgtggaggactggtgtctgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 aggaggtggctcacaggataaaaagagcacttgctataaatgtggaggactggtgtctgg 134

                                                                       
Query: 421 atccctggaacacacataaatggcagtcaaatgtgggagcctacaatcacaacactctag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 atccctggaacacacataaatggcagtcaaatgtgggagcctacaatcacaacactctag 74

                                                                       
Query: 481 aggcagaggccaggtatctctaggcatgctgagtagataagcttagaactgacatgctct 540
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 73  aggcagaggccaggtatctctaggcatgctgagtagatgagcttagaactgacatgctct 14

                        
Query: 541 gggttcagtaact 553
           |||||||||||||
Sbjct: 13  gggttcagtaact 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space:   703044
Effective search space used:   703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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