BAC Information

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BAC

Clone NameMSMg01-540A12
Chromosome6 (Build37)
Map Location 147,244,445 - 147,432,047
singlet/doubletdoublet
Overlap geneEG622129, Ccdc91
Upstream geneItpr2, 4933424B01Rik, Fgfr1op2, Tm7sf3, Surb7, EG626175, Stk38l, LOC621842, Arntl2, 1700023A16Rik, Ppfibp1, 1700034J05Rik, 2210417D09Rik, Mrps35, EG545893, Klhdc5, EG665288, LOC100039641, Pthlh
Downstream geneLOC100039712, LOC100039727, LOC100039736, Mlstd1, Ergic2, Tmtc1, 1110033J19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-540A12.T7 (MSMg01no540_a12.b1)MSMg01-540A12.TJ (MSMg01no540_a12.g1)
ACCAG606380AG606381
length720725
length of high quality
(start - end)		551 (81 - 631)619 (84 - 702)
definitionCHROMAT_FILE: MSMg01no540_a12.b1 PHD_FILE: MSMg01no540_a12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:19:11 2005CHROMAT_FILE: MSMg01no540_a12.g1 PHD_FILE: MSMg01no540_a12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:19:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,431,497 - 147,432,047)(147,244,445 - 147,245,063)
sequence
NTTTAAAACTAATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAGTCTTACCTTTCTTTCCACTGTCAGGCTATATATAC
TGTGGCTGTCGATTCTATCACTCATGCCTACAATTTCTGTCTGTGTCAGT
GATAAAACTCACAGAACACAGCATGTCCTCACAGGGCACACTTTGTGTTT
CACCTTCATGGGCTGAATGAGGCTTCTAGCCAACCACCTATAGAAACAGA
GTGAGTAGCCAGCATACCTACTGCAGTTTCCTCAAGGGCACACAAACTAA
TTTCTCAGGATGGACATATAGTGGTCATTCATCTCAATTCAGGGTGTGGT
CCTATCCTTCATCGAGGCTTTGTCCTATCATCTCCTGGTTCCAACTTTCA
GATGTAATCTATTCAGGGTAGTGTGTCTCTAGATTCCAGTCCAACCTCCC
AGACCCCATTCCTTCACAATCAGTACTCTACTGTGAAGTACTTAAACTTC
TCTCACCTTCCTGACTGATGTCCTGGAAGATCTGAGGGAGAAGATCTCAA
CTGAACCCTAGGCGAACACACCACAGACCCTGCAGATCTCAGCTATGCAT
CCCCCACACCTCTCGCTTCTGGCTTCTTAATTTTCAGACTGAGAGTTCAC
AGATCCTACTTTGTGCACCTATCAAAGGTCTGACCTGCAAACAGTGTCTC
TTTAAAAAAAACAGACTTGT

TTTAATTAATACGAGCTATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCCTCTCCCTGCACTG
TAGCAACTGCTTCAAGAGAGATATGATAGACATAAAAAGAGAAGAATAAA
GACTGTTTCCTGGCTTTGGAAAGCCTAGGTCCTTGGTGTTTAGGAAGCAA
AGGAACACTTCACAGAGCAAATGAAGTAGATTCAGAAGAAAGCTTATTTC
AAAAATGCTCCCTGCAGGGACTTCCTACCCACATCTCACAGATGCACACA
GGACCGCCATTGATTCATGAATGTGCAGCTATGCTCAGTACAGATCCCCT
TGACTGAGGAAGGAAGACTTGCTAGGTCTTGAGTGAAGAGAGGCTCATAC
TTCTCTTCTAGGTTTGGAGTTCCAGGCTGACTAAATGTGTGCCTCTGTCC
AGGTTGATGGACCTGTGACGGACTCATGACTGTGCTCAAGTCCCAAAGCT
CTATAGAGACTGTGACCCTGGGAGCAGCTACGACATAGGACAATTTATGA
CCATCCCTGGTTCCCTACAGCCTGCCCCTTTGTAAGAGAGGTCAAAAGAG
AGAAAAGCACAGCCTAACACCAGACAGGTGTGTGACAGAACAATATAGAC
ACAAACAGTTCTTGTAGTTAGGAAGAAGGGACAATAGAACAGTGAGCTAT
GTAGACAAGGGAACAACGAGTAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no540_a12.b1 MSMg01no540_a12.b1 CHROMAT_FILE:
MSMg01no540_a12.b1 PHD_FILE: MSMg01no540_a12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:11 2005
         (551 letters)



>mm_chr6_147431152_147432102
          Length = 951

 Score = 1058 bits (547), Expect = 0.0
 Identities = 550/551 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactgtcaggctatatatactgtggctgtcgattctatcactcatgcctacaatttctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896 cactgtcaggctatatatactgtggctgtcgattctatcactcatgcctacaatttctgt 837

                                                                       
Query: 61  ctgtgtcagtgataaaactcacagaacacagcatgtcctcacagggcacactttgtgttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 ctgtgtcagtgataaaactcacagaacacagcatgtcctcacagggcacactttgtgttt 777

                                                                       
Query: 121 caccttcatgggctgaatgaggcttctagccaaccacctatagaaacagagtgagtagcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 caccttcatgggctgaatgaggcttctagccaaccacctatagaaacagagtgagtagcc 717

                                                                       
Query: 181 agcatacctactgcagtttcctcaagggcacacaaactaatttctcaggatggacatata 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 716 agcatacctactgcagtttcctcaagggcacacaaactaatttctcaggatggacataga 657

                                                                       
Query: 241 gtggtcattcatctcaattcagggtgtggtcctatccttcatcgaggctttgtcctatca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 gtggtcattcatctcaattcagggtgtggtcctatccttcatcgaggctttgtcctatca 597

                                                                       
Query: 301 tctcctggttccaactttcagatgtaatctattcagggtagtgtgtctctagattccagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 tctcctggttccaactttcagatgtaatctattcagggtagtgtgtctctagattccagt 537

                                                                       
Query: 361 ccaacctcccagaccccattccttcacaatcagtactctactgtgaagtacttaaacttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 ccaacctcccagaccccattccttcacaatcagtactctactgtgaagtacttaaacttc 477

                                                                       
Query: 421 tctcaccttcctgactgatgtcctggaagatctgagggagaagatctcaactgaacccta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tctcaccttcctgactgatgtcctggaagatctgagggagaagatctcaactgaacccta 417

                                                                       
Query: 481 ggcgaacacaccacagaccctgcagatctcagctatgcatcccccacacctctcgcttct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ggcgaacacaccacagaccctgcagatctcagctatgcatcccccacacctctcgcttct 357

                      
Query: 541 ggcttcttaat 551
           |||||||||||
Sbjct: 356 ggcttcttaat 346


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space:   509081
Effective search space used:   509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no540_a12.g1 MSMg01no540_a12.g1 CHROMAT_FILE:
MSMg01no540_a12.g1 PHD_FILE: MSMg01no540_a12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:11 2005
         (619 letters)



>mm_chr6_147244245_147245263
          Length = 1019

 Score = 1197 bits (619), Expect = 0.0
 Identities = 619/619 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcctctccctgcactgtagcaactgcttcaagagagatatgatagacataaaaagagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcctctccctgcactgtagcaactgcttcaagagagatatgatagacataaaaagagaa 260

                                                                       
Query: 61  gaataaagactgtttcctggctttggaaagcctaggtccttggtgtttaggaagcaaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaataaagactgtttcctggctttggaaagcctaggtccttggtgtttaggaagcaaagg 320

                                                                       
Query: 121 aacacttcacagagcaaatgaagtagattcagaagaaagcttatttcaaaaatgctccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacacttcacagagcaaatgaagtagattcagaagaaagcttatttcaaaaatgctccct 380

                                                                       
Query: 181 gcagggacttcctacccacatctcacagatgcacacaggaccgccattgattcatgaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagggacttcctacccacatctcacagatgcacacaggaccgccattgattcatgaatg 440

                                                                       
Query: 241 tgcagctatgctcagtacagatccccttgactgaggaaggaagacttgctaggtcttgag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcagctatgctcagtacagatccccttgactgaggaaggaagacttgctaggtcttgag 500

                                                                       
Query: 301 tgaagagaggctcatacttctcttctaggtttggagttccaggctgactaaatgtgtgcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgaagagaggctcatacttctcttctaggtttggagttccaggctgactaaatgtgtgcc 560

                                                                       
Query: 361 tctgtccaggttgatggacctgtgacggactcatgactgtgctcaagtcccaaagctcta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctgtccaggttgatggacctgtgacggactcatgactgtgctcaagtcccaaagctcta 620

                                                                       
Query: 421 tagagactgtgaccctgggagcagctacgacataggacaatttatgaccatccctggttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagagactgtgaccctgggagcagctacgacataggacaatttatgaccatccctggttc 680

                                                                       
Query: 481 cctacagcctgcccctttgtaagagaggtcaaaagagagaaaagcacagcctaacaccag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cctacagcctgcccctttgtaagagaggtcaaaagagagaaaagcacagcctaacaccag 740

                                                                       
Query: 541 acaggtgtgtgacagaacaatatagacacaaacagttcttgtagttaggaagaagggaca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acaggtgtgtgacagaacaatatagacacaaacagttcttgtagttaggaagaagggaca 800

                              
Query: 601 atagaacagtgagctatgt 619
           |||||||||||||||||||
Sbjct: 801 atagaacagtgagctatgt 819


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space:   614481
Effective search space used:   614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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